Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TFF3Q07654 AC022211.4-201ENST00000625094 2161 ntBASIC19.44■□□□□ 0.7
TFF3Q07654 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 AC144652.1-201ENST00000609974 1624 ntBASIC19.44■□□□□ 0.7
TFF3Q07654 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.44■□□□□ 0.7
TFF3Q07654 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.44■□□□□ 0.7
TFF3Q07654 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
TFF3Q07654 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.44■□□□□ 0.7
TFF3Q07654 LINC01529-204ENST00000636474 1715 ntBASIC19.44■□□□□ 0.7
TFF3Q07654 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TFF3Q07654 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.44■□□□□ 0.7
TFF3Q07654 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.43■□□□□ 0.7
TFF3Q07654 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.43■□□□□ 0.7
TFF3Q07654 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.43■□□□□ 0.7
TFF3Q07654 RAP2CP1-201ENST00000605103 478 ntBASIC19.43■□□□□ 0.7
TFF3Q07654 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TFF3Q07654 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TFF3Q07654 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.42■□□□□ 0.7
TFF3Q07654 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.42■□□□□ 0.7
TFF3Q07654 TPRG1LP1-201ENST00000598702 760 ntBASIC19.42■□□□□ 0.7
TFF3Q07654 AC080038.1-201ENST00000611274 1154 ntBASIC19.42■□□□□ 0.7
TFF3Q07654 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TFF3Q07654 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TFF3Q07654 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.41■□□□□ 0.7
TFF3Q07654 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.41■□□□□ 0.7
TFF3Q07654 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.41■□□□□ 0.7
TFF3Q07654 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.41■□□□□ 0.7
TFF3Q07654 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.41■□□□□ 0.7
TFF3Q07654 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.41■□□□□ 0.7
TFF3Q07654 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TFF3Q07654 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TFF3Q07654 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.4■□□□□ 0.7
TFF3Q07654 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TFF3Q07654 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.4■□□□□ 0.7
TFF3Q07654 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.4■□□□□ 0.7
TFF3Q07654 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.4■□□□□ 0.7
TFF3Q07654 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.4■□□□□ 0.7
TFF3Q07654 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.4■□□□□ 0.7
TFF3Q07654 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TFF3Q07654 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TFF3Q07654 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TFF3Q07654 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
TFF3Q07654 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TFF3Q07654 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.39■□□□□ 0.69
TFF3Q07654 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.39■□□□□ 0.69
TFF3Q07654 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.39■□□□□ 0.69
TFF3Q07654 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.39■□□□□ 0.69
TFF3Q07654 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.39■□□□□ 0.69
TFF3Q07654 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.39■□□□□ 0.69
TFF3Q07654 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.39■□□□□ 0.69
TFF3Q07654 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TFF3Q07654 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TFF3Q07654 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.38■□□□□ 0.69
TFF3Q07654 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TFF3Q07654 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 CDCA4P2-201ENST00000441182 718 ntBASIC19.38■□□□□ 0.69
TFF3Q07654 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TFF3Q07654 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.38■□□□□ 0.69
TFF3Q07654 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.38■□□□□ 0.69
TFF3Q07654 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.38■□□□□ 0.69
TFF3Q07654 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.38■□□□□ 0.69
TFF3Q07654 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.38■□□□□ 0.69
TFF3Q07654 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TFF3Q07654 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.37■□□□□ 0.69
TFF3Q07654 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TFF3Q07654 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TFF3Q07654 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.37■□□□□ 0.69
TFF3Q07654 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms