Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 HIS4YCL030C 2400 nt5.67□□□□□ -1.5
UBP3Q01477 IMA3YIL172C 1770 nt5.67□□□□□ -1.5
UBP3Q01477 IMA4YJL221C 1770 nt5.67□□□□□ -1.5
UBP3Q01477 ASF2YDL197C 1578 nt5.67□□□□□ -1.5
UBP3Q01477 EXO1YOR033C 2109 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 ADE13YLR359W 1449 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 IOC4YMR044W 1428 nt5.66□□□□□ -1.5
UBP3Q01477 MRS2YOR334W 1413 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 YGL036WYGL036W 2730 nt5.66□□□□□ -1.5
UBP3Q01477 YCR015CYCR015C 954 nt5.66□□□□□ -1.5
UBP3Q01477 MPO1YGL010W 525 nt5.66□□□□□ -1.5
UBP3Q01477 YGL185CYGL185C 1140 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 NQM1YGR043C 1002 nt5.66□□□□□ -1.5
UBP3Q01477 SCW4YGR279C 1161 nt5.66□□□□□ -1.5
UBP3Q01477 COS8YHL048W 1146 nt5.66□□□□□ -1.5
UBP3Q01477 DOG2YHR043C 741 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 DOG1YHR044C 741 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 BOS1YLR078C 735 nt5.66□□□□□ -1.5
UBP3Q01477 SHE1YBL031W 1017 nt5.66□□□□□ -1.5
UBP3Q01477 DUG3YNL191W 1074 nt5.66□□□□□ -1.5
UBP3Q01477 RPS19BYNL302C 435 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 YBL096CYBL096C 309 nt5.66□□□□□ -1.5
UBP3Q01477 CYC2YOR037W 1101 nt5.66□□□□□ -1.5
UBP3Q01477 YOR318CYOR318C 306 nt5.66□□□□□ -1.5
UBP3Q01477 CUP9YPL177C 921 nt5.66□□□□□ -1.5
UBP3Q01477 USV1YPL230W 1176 nt5.66□□□□□ -1.5 RIP-Chip
UBP3Q01477 TRE1YPL176C 2352 nt5.66□□□□□ -1.5
UBP3Q01477 COM2YER130C 1332 nt5.66□□□□□ -1.5
UBP3Q01477 YNR066CYNR066C 1311 nt5.66□□□□□ -1.5
UBP3Q01477 HPF1YOL155C 2904 nt5.66□□□□□ -1.5
UBP3Q01477 QDR1YIL120W 1692 nt5.66□□□□□ -1.5
UBP3Q01477 MIH1YMR036C 1665 nt5.66□□□□□ -1.5
UBP3Q01477 TEA1YOR337W 2280 nt5.65□□□□□ -1.5
UBP3Q01477 TFA1YKL028W 1449 nt5.65□□□□□ -1.5
UBP3Q01477 IWR1YDL115C 1062 nt5.65□□□□□ -1.5
UBP3Q01477 snR7-LsnR7-L 214 nt5.65□□□□□ -1.5
UBP3Q01477 VCX1YDL128W 1236 nt5.65□□□□□ -1.5
UBP3Q01477 YDR053WYDR053W 396 nt5.65□□□□□ -1.5
UBP3Q01477 UTR4YEL038W 684 nt5.65□□□□□ -1.5
UBP3Q01477 SLO1YER180C-A 258 nt5.65□□□□□ -1.5
UBP3Q01477 MLC1YGL106W 450 nt5.65□□□□□ -1.5
UBP3Q01477 PPX1YHR201C 1194 nt5.65□□□□□ -1.5
UBP3Q01477 AIM19YIL087C 474 nt5.65□□□□□ -1.5
UBP3Q01477 BAT2YJR148W 1131 nt5.65□□□□□ -1.5
UBP3Q01477 AAD10YJR155W 867 nt5.65□□□□□ -1.5
UBP3Q01477 ATG8YBL078C 354 nt5.65□□□□□ -1.5
UBP3Q01477 DIM1YPL266W 957 nt5.65□□□□□ -1.5
UBP3Q01477 SKM1YOL113W 1968 nt5.65□□□□□ -1.51
UBP3Q01477 YNL011CYNL011C 1335 nt5.65□□□□□ -1.51
UBP3Q01477 CTS1YLR286C 1689 nt5.65□□□□□ -1.51
UBP3Q01477 TYW1YPL207W 2433 nt5.65□□□□□ -1.51
UBP3Q01477 MMP1YLL061W 1752 nt5.65□□□□□ -1.51 RIP-Chip
UBP3Q01477 RCM1YNL022C 1473 nt5.64□□□□□ -1.51
UBP3Q01477 CPR4YCR069W 957 nt5.64□□□□□ -1.51
UBP3Q01477 TUP1YCR084C 2142 nt5.64□□□□□ -1.51
UBP3Q01477 PRO3YER023W 861 nt5.64□□□□□ -1.51
UBP3Q01477 CYC1YJR048W 330 nt5.64□□□□□ -1.51
UBP3Q01477 TEF4YKL081W 1239 nt5.64□□□□□ -1.51
UBP3Q01477 LEM3YNL323W 1245 nt5.64□□□□□ -1.51
UBP3Q01477 BUD17YNR027W 954 nt5.64□□□□□ -1.51
UBP3Q01477 DCI1YOR180C 816 nt5.64□□□□□ -1.51
UBP3Q01477 PLP2YOR281C 861 nt5.64□□□□□ -1.51
UBP3Q01477 ARX1YDR101C 1782 nt5.64□□□□□ -1.51
UBP3Q01477 SNT2YGL131C 4212 nt5.64□□□□□ -1.51 RIP-Chip
UBP3Q01477 YDR391CYDR391C 699 nt5.63□□□□□ -1.51
UBP3Q01477 RNA15YGL044C 891 nt5.63□□□□□ -1.51
UBP3Q01477 YGL194C-AYGL194C-A 243 nt5.63□□□□□ -1.51
UBP3Q01477 RPL24BYGR148C 468 nt5.63□□□□□ -1.51
UBP3Q01477 SOL3YHR163W 750 nt5.63□□□□□ -1.51
UBP3Q01477 CMS1YLR003C 876 nt5.63□□□□□ -1.51
UBP3Q01477 GAT3YLR013W 426 nt5.63□□□□□ -1.51
UBP3Q01477 PRX1YBL064C 786 nt5.63□□□□□ -1.51
UBP3Q01477 RRG9YNL213C 645 nt5.63□□□□□ -1.51
UBP3Q01477 YOR034C-AYOR034C-A 243 nt5.63□□□□□ -1.51
UBP3Q01477 TYE7YOR344C 876 nt5.63□□□□□ -1.51
UBP3Q01477 YBR056W-AYBR056W-A 201 nt5.63□□□□□ -1.51
UBP3Q01477 BMT2YBR141C 1014 nt5.63□□□□□ -1.51
UBP3Q01477 RRP7YCL031C 894 nt5.63□□□□□ -1.51 RIP-Chip
UBP3Q01477 ATG20YDL113C 1923 nt5.63□□□□□ -1.51
UBP3Q01477 VTH1YIL173W 4650 nt5.63□□□□□ -1.51
UBP3Q01477 VTH2YJL222W 4650 nt5.63□□□□□ -1.51
UBP3Q01477 ECM32YER176W 3366 nt5.62□□□□□ -1.51
UBP3Q01477 ATH1YPR026W 3636 nt5.62□□□□□ -1.51 RIP-Chip
UBP3Q01477 SCM3YDL139C 672 nt5.62□□□□□ -1.51
UBP3Q01477 SRB7YDR308C 423 nt5.62□□□□□ -1.51
UBP3Q01477 YGR026WYGR026W 837 nt5.62□□□□□ -1.51
UBP3Q01477 CKA1YIL035C 1119 nt5.62□□□□□ -1.51
UBP3Q01477 YJL218WYJL218W 591 nt5.62□□□□□ -1.51
UBP3Q01477 YAL069WYAL069W 315 nt5.62□□□□□ -1.51
UBP3Q01477 NYV1YLR093C 762 nt5.62□□□□□ -1.51
UBP3Q01477 GMC2YLR445W 567 nt5.62□□□□□ -1.51
UBP3Q01477 GPI12YMR281W 915 nt5.62□□□□□ -1.51 RIP-Chip
UBP3Q01477 HNT3YOR258W 654 nt5.62□□□□□ -1.51
UBP3Q01477 YBR287WYBR287W 1284 nt5.62□□□□□ -1.51
UBP3Q01477 RPT4YOR259C 1314 nt5.62□□□□□ -1.51
UBP3Q01477 BRF1YGR246C 1791 nt5.62□□□□□ -1.51 RIP-Chip
UBP3Q01477 NTH2YBR001C 2343 nt5.62□□□□□ -1.51
UBP3Q01477 SYP1YCR030C 2613 nt5.61□□□□□ -1.51
UBP3Q01477 ATC1YDR184C 885 nt5.61□□□□□ -1.51
UBP3Q01477 MF(ALPHA)2YGL089C 363 nt5.61□□□□□ -1.51
Retrieved 100 of 7,029 protein–RNA pairs in 31.4 ms