Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
FOXA3P55318 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
FOXA3P55318 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
FOXA3P55318 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
FOXA3P55318 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA3P55318 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA3P55318 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA3P55318 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 MLEC-202ENST00000412616 841 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA3P55318 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
FOXA3P55318 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA3P55318 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA3P55318 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
FOXA3P55318 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA3P55318 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA3P55318 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA3P55318 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.5■□□□□ 0.23
FOXA3P55318 AC016575.1-201ENST00000607026 382 ntBASIC16.5■□□□□ 0.23
FOXA3P55318 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
FOXA3P55318 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA3P55318 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
FOXA3P55318 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA3P55318 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA3P55318 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA3P55318 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
FOXA3P55318 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 AL592295.1-201ENST00000400984 884 ntBASIC16.49■□□□□ 0.23
FOXA3P55318 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA3P55318 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
FOXA3P55318 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
FOXA3P55318 AC007029.1-201ENST00000604183 313 ntBASIC16.49■□□□□ 0.23
FOXA3P55318 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA3P55318 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA3P55318 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA3P55318 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
FOXA3P55318 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
FOXA3P55318 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA3P55318 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
FOXA3P55318 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA3P55318 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
FOXA3P55318 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA3P55318 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
FOXA3P55318 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXA3P55318 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA3P55318 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
FOXA3P55318 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA3P55318 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms