Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.04■■■□□ 2.56
MSH6P52701 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC31.04■■■□□ 2.56
MSH6P52701 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC31.04■■■□□ 2.56
MSH6P52701 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC31.04■■■□□ 2.56
MSH6P52701 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC31.04■■■□□ 2.56
MSH6P52701 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC31.04■■■□□ 2.56
MSH6P52701 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH6P52701 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH6P52701 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
MSH6P52701 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
MSH6P52701 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
MSH6P52701 SLC29A4P1-201ENST00000398760 971 ntBASIC31.03■■■□□ 2.56
MSH6P52701 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC31.03■■■□□ 2.56
MSH6P52701 AC231657.2-201ENST00000624556 255 ntBASIC31.03■■■□□ 2.56
MSH6P52701 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
MSH6P52701 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
MSH6P52701 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
MSH6P52701 PFKL-212ENST00000628044 129 ntTSL 3 BASIC31.02■■■□□ 2.56
MSH6P52701 AC092803.2-201ENST00000564287 1899 ntBASIC31.02■■■□□ 2.56
MSH6P52701 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC31.01■■■□□ 2.56
MSH6P52701 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
MSH6P52701 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC31.01■■■□□ 2.56
MSH6P52701 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
MSH6P52701 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MSH6P52701 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
MSH6P52701 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH6P52701 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
MSH6P52701 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC31.01■■■□□ 2.55
MSH6P52701 AC005181.1-201ENST00000604782 1256 ntBASIC31.01■■■□□ 2.55
MSH6P52701 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC31.01■■■□□ 2.55
MSH6P52701 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
MSH6P52701 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
MSH6P52701 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
MSH6P52701 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC31■■■□□ 2.55
MSH6P52701 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
MSH6P52701 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC31■■■□□ 2.55
MSH6P52701 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC31■■■□□ 2.55
MSH6P52701 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
MSH6P52701 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
MSH6P52701 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC30.99■■■□□ 2.55
MSH6P52701 TBCB-214ENST00000629269 413 ntTSL 5 BASIC30.99■■■□□ 2.55
MSH6P52701 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
MSH6P52701 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
MSH6P52701 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
MSH6P52701 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
MSH6P52701 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC30.98■■■□□ 2.55
MSH6P52701 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MSH6P52701 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH6P52701 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC30.98■■■□□ 2.55
MSH6P52701 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MSH6P52701 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC30.98■■■□□ 2.55
MSH6P52701 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MSH6P52701 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH6P52701 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MSH6P52701 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MSH6P52701 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC30.97■■■□□ 2.55
MSH6P52701 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC30.97■■■□□ 2.55
MSH6P52701 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC30.97■■■□□ 2.55
MSH6P52701 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
MSH6P52701 CPT2-209ENST00000636935 803 ntTSL 5 BASIC30.97■■■□□ 2.55
MSH6P52701 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MSH6P52701 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.97■■■□□ 2.55
MSH6P52701 HLA-L-211ENST00000482052 1765 ntBASIC30.97■■■□□ 2.55
MSH6P52701 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.97■■■□□ 2.55
MSH6P52701 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH6P52701 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH6P52701 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
MSH6P52701 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC30.96■■■□□ 2.55
MSH6P52701 AC079140.4-201ENST00000507448 529 ntBASIC30.96■■■□□ 2.55
MSH6P52701 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
MSH6P52701 AC087239.1-201ENST00000622671 572 ntBASIC30.96■■■□□ 2.55
MSH6P52701 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.96■■■□□ 2.55
MSH6P52701 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH6P52701 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH6P52701 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
MSH6P52701 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC30.95■■■□□ 2.55
MSH6P52701 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC30.95■■■□□ 2.55
MSH6P52701 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
MSH6P52701 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
MSH6P52701 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.95■■■□□ 2.54
MSH6P52701 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.94■■■□□ 2.54
MSH6P52701 AC007322.1-201ENST00000426983 750 ntBASIC30.94■■■□□ 2.54
MSH6P52701 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC30.94■■■□□ 2.54
MSH6P52701 DUX4L16-201ENST00000555130 1264 ntBASIC30.94■■■□□ 2.54
MSH6P52701 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
MSH6P52701 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
MSH6P52701 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC30.94■■■□□ 2.54
MSH6P52701 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
MSH6P52701 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC30.93■■■□□ 2.54
MSH6P52701 POU5F1P3-201ENST00000428824 1078 ntBASIC30.93■■■□□ 2.54
MSH6P52701 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC30.93■■■□□ 2.54
MSH6P52701 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC30.93■■■□□ 2.54
MSH6P52701 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC30.93■■■□□ 2.54
MSH6P52701 ITM2C-210ENST00000620962 501 ntBASIC30.93■■■□□ 2.54
MSH6P52701 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
MSH6P52701 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC30.92■■■□□ 2.54
MSH6P52701 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 AC073210.2-201ENST00000430369 194 ntBASIC30.92■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms