Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC135731.1-201ENST00000569415 2548 ntBASIC22.25■■□□□ 1.15
CXCL12P48061 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CXCL12P48061 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.25■■□□□ 1.15
CXCL12P48061 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.25■■□□□ 1.15
CXCL12P48061 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.25■■□□□ 1.15
CXCL12P48061 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.25■■□□□ 1.15
CXCL12P48061 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.25■■□□□ 1.15
CXCL12P48061 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CXCL12P48061 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CXCL12P48061 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.24■■□□□ 1.15
CXCL12P48061 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 MIR663A-201ENST00000385250 93 ntBASIC22.24■■□□□ 1.15
CXCL12P48061 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.24■■□□□ 1.15
CXCL12P48061 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.24■■□□□ 1.15
CXCL12P48061 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CXCL12P48061 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CXCL12P48061 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CXCL12P48061 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CXCL12P48061 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CXCL12P48061 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.23■■□□□ 1.15
CXCL12P48061 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.23■■□□□ 1.15
CXCL12P48061 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.23■■□□□ 1.15
CXCL12P48061 CD99P1-205ENST00000527459 561 ntBASIC22.23■■□□□ 1.15
CXCL12P48061 AC068587.7-201ENST00000641602 218 ntBASIC22.23■■□□□ 1.15
CXCL12P48061 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CXCL12P48061 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CXCL12P48061 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
CXCL12P48061 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.22■■□□□ 1.15
CXCL12P48061 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC22.22■■□□□ 1.15
CXCL12P48061 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.22■■□□□ 1.15
CXCL12P48061 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CXCL12P48061 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC22.21■■□□□ 1.15
CXCL12P48061 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 AP003733.4-201ENST00000623785 1697 ntBASIC22.21■■□□□ 1.15
CXCL12P48061 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CXCL12P48061 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.21■■□□□ 1.15
CXCL12P48061 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CXCL12P48061 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC22.21■■□□□ 1.15
CXCL12P48061 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CXCL12P48061 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
CXCL12P48061 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.2■■□□□ 1.14
CXCL12P48061 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CXCL12P48061 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.2■■□□□ 1.14
CXCL12P48061 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CXCL12P48061 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.2■■□□□ 1.14
CXCL12P48061 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.2■■□□□ 1.14
CXCL12P48061 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CXCL12P48061 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CXCL12P48061 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CXCL12P48061 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CXCL12P48061 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CXCL12P48061 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CXCL12P48061 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.19■■□□□ 1.14
CXCL12P48061 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.19■■□□□ 1.14
CXCL12P48061 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.19■■□□□ 1.14
CXCL12P48061 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
CXCL12P48061 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CXCL12P48061 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.18■■□□□ 1.14
CXCL12P48061 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.18■■□□□ 1.14
CXCL12P48061 AC087239.1-201ENST00000622671 572 ntBASIC22.18■■□□□ 1.14
CXCL12P48061 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CXCL12P48061 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CXCL12P48061 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CXCL12P48061 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CXCL12P48061 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CXCL12P48061 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CXCL12P48061 AC079140.4-201ENST00000507448 529 ntBASIC22.17■■□□□ 1.14
CXCL12P48061 SMUG1P1-201ENST00000590640 811 ntBASIC22.17■■□□□ 1.14
CXCL12P48061 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.17■■□□□ 1.14
CXCL12P48061 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.17■■□□□ 1.14
CXCL12P48061 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CXCL12P48061 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CXCL12P48061 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CXCL12P48061 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.16■■□□□ 1.14
CXCL12P48061 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.16■■□□□ 1.14
CXCL12P48061 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.16■■□□□ 1.14
CXCL12P48061 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CXCL12P48061 CPT2-209ENST00000636935 803 ntTSL 5 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms