Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
TRIM13O60858 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM13O60858 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM13O60858 FBXW4P1-201ENST00000426721 2239 ntBASIC21.7■■□□□ 1.06
TRIM13O60858 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM13O60858 FP325331.1-202ENST00000623531 1380 ntBASIC21.7■■□□□ 1.06
TRIM13O60858 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM13O60858 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM13O60858 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM13O60858 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
TRIM13O60858 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRIM13O60858 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM13O60858 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM13O60858 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM13O60858 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM13O60858 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM13O60858 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TRIM13O60858 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM13O60858 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TRIM13O60858 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
TRIM13O60858 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM13O60858 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM13O60858 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM13O60858 AL137060.1-201ENST00000618151 2648 ntBASIC21.67■■□□□ 1.06
TRIM13O60858 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM13O60858 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM13O60858 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.66■■□□□ 1.06
TRIM13O60858 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 AC103834.1-201ENST00000520383 144 ntBASIC21.66■■□□□ 1.06
TRIM13O60858 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.66■■□□□ 1.06
TRIM13O60858 AC137630.3-201ENST00000607245 391 ntBASIC21.66■■□□□ 1.06
TRIM13O60858 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.66■■□□□ 1.06
TRIM13O60858 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRIM13O60858 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRIM13O60858 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
TRIM13O60858 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM13O60858 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRIM13O60858 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.65■■□□□ 1.06
TRIM13O60858 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
TRIM13O60858 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM13O60858 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM13O60858 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM13O60858 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM13O60858 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.65■■□□□ 1.06
TRIM13O60858 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRIM13O60858 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM13O60858 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM13O60858 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM13O60858 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
TRIM13O60858 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM13O60858 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
TRIM13O60858 AC005703.6-201ENST00000623265 1329 ntBASIC21.64■■□□□ 1.05
TRIM13O60858 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM13O60858 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.64■■□□□ 1.05
TRIM13O60858 MIR6722-201ENST00000617286 78 ntBASIC21.64■■□□□ 1.05
TRIM13O60858 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TRIM13O60858 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TRIM13O60858 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM13O60858 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.64■■□□□ 1.05
TRIM13O60858 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.63■■□□□ 1.05
TRIM13O60858 AC103724.3-201ENST00000564481 992 ntBASIC21.63■■□□□ 1.05
TRIM13O60858 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.63■■□□□ 1.05
TRIM13O60858 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.63■■□□□ 1.05
TRIM13O60858 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM13O60858 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
TRIM13O60858 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM13O60858 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TRIM13O60858 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM13O60858 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms