Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBFD1O14562 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBFD1O14562 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.46■■□□□ 1.03
UBFD1O14562 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBFD1O14562 AC092028.1-203ENST00000608262 953 ntBASIC21.46■■□□□ 1.03
UBFD1O14562 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.46■■□□□ 1.03
UBFD1O14562 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBFD1O14562 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
UBFD1O14562 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.46■■□□□ 1.03
UBFD1O14562 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
UBFD1O14562 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
UBFD1O14562 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBFD1O14562 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBFD1O14562 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBFD1O14562 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.45■■□□□ 1.02
UBFD1O14562 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.45■■□□□ 1.02
UBFD1O14562 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.45■■□□□ 1.02
UBFD1O14562 DUX4L4-201ENST00000566884 1269 ntBASIC21.45■■□□□ 1.02
UBFD1O14562 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBFD1O14562 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.45■■□□□ 1.02
UBFD1O14562 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBFD1O14562 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
UBFD1O14562 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 AC009102.2-201ENST00000606772 1639 ntBASIC21.44■■□□□ 1.02
UBFD1O14562 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UBFD1O14562 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
UBFD1O14562 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UBFD1O14562 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
UBFD1O14562 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
UBFD1O14562 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
UBFD1O14562 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
UBFD1O14562 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
UBFD1O14562 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UBFD1O14562 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
UBFD1O14562 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.42■■□□□ 1.02
UBFD1O14562 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.42■■□□□ 1.02
UBFD1O14562 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.42■■□□□ 1.02
UBFD1O14562 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.42■■□□□ 1.02
UBFD1O14562 LINC01960-201ENST00000563759 1884 ntBASIC21.41■■□□□ 1.02
UBFD1O14562 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.41■■□□□ 1.02
UBFD1O14562 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
UBFD1O14562 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
UBFD1O14562 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
UBFD1O14562 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.41■■□□□ 1.02
UBFD1O14562 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.41■■□□□ 1.02
UBFD1O14562 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
UBFD1O14562 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
UBFD1O14562 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.4■■□□□ 1.02
UBFD1O14562 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
UBFD1O14562 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.4■■□□□ 1.02
UBFD1O14562 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
UBFD1O14562 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.4■■□□□ 1.02
UBFD1O14562 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.4■■□□□ 1.02
UBFD1O14562 FBXW4P1-201ENST00000426721 2239 ntBASIC21.4■■□□□ 1.02
UBFD1O14562 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
UBFD1O14562 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
UBFD1O14562 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
UBFD1O14562 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
UBFD1O14562 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
UBFD1O14562 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
UBFD1O14562 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.39■■□□□ 1.01
UBFD1O14562 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.39■■□□□ 1.01
UBFD1O14562 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 AC009086.3-201ENST00000623486 1008 ntBASIC21.39■■□□□ 1.01
UBFD1O14562 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.39■■□□□ 1.01
UBFD1O14562 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.39■■□□□ 1.01
UBFD1O14562 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
UBFD1O14562 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBFD1O14562 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBFD1O14562 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBFD1O14562 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
UBFD1O14562 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.38■■□□□ 1.01
UBFD1O14562 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
UBFD1O14562 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UBFD1O14562 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBFD1O14562 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
UBFD1O14562 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms