Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.26■□□□□ 0.99
CACNA1AO00555 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.26■□□□□ 0.99
CACNA1AO00555 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.26■□□□□ 0.99
CACNA1AO00555 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CACNA1AO00555 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CACNA1AO00555 UNC93B5-201ENST00000530315 699 ntBASIC21.26■□□□□ 0.99
CACNA1AO00555 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.26■□□□□ 0.99
CACNA1AO00555 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1AO00555 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1AO00555 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.25■□□□□ 0.99
CACNA1AO00555 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.25■□□□□ 0.99
CACNA1AO00555 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1AO00555 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CACNA1AO00555 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1AO00555 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.25■□□□□ 0.99
CACNA1AO00555 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1AO00555 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CACNA1AO00555 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CACNA1AO00555 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.24■□□□□ 0.99
CACNA1AO00555 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.24■□□□□ 0.99
CACNA1AO00555 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.24■□□□□ 0.99
CACNA1AO00555 AC073648.6-201ENST00000641589 218 ntBASIC21.24■□□□□ 0.99
CACNA1AO00555 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1AO00555 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.24■□□□□ 0.99
CACNA1AO00555 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1AO00555 MYCNOS-205ENST00000641950 531 ntBASIC21.24■□□□□ 0.99
CACNA1AO00555 AL022069.1-201ENST00000568025 1636 ntBASIC21.24■□□□□ 0.99
CACNA1AO00555 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1AO00555 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CACNA1AO00555 UBE2SP1-201ENST00000450587 669 ntBASIC21.23■□□□□ 0.99
CACNA1AO00555 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.23■□□□□ 0.99
CACNA1AO00555 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1AO00555 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1AO00555 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1AO00555 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1AO00555 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1AO00555 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.23■□□□□ 0.99
CACNA1AO00555 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1AO00555 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1AO00555 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.22■□□□□ 0.99
CACNA1AO00555 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1AO00555 MKRN4P-201ENST00000444706 1521 ntBASIC21.22■□□□□ 0.99
CACNA1AO00555 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.22■□□□□ 0.99
CACNA1AO00555 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.22■□□□□ 0.99
CACNA1AO00555 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1AO00555 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1AO00555 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.21■□□□□ 0.99
CACNA1AO00555 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.21■□□□□ 0.99
CACNA1AO00555 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1AO00555 BX088651.1-201ENST00000540551 451 ntBASIC21.21■□□□□ 0.99
CACNA1AO00555 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1AO00555 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.21■□□□□ 0.99
CACNA1AO00555 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CACNA1AO00555 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1AO00555 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CACNA1AO00555 AC026366.1-201ENST00000488803 879 ntBASIC21.21■□□□□ 0.99
CACNA1AO00555 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.21■□□□□ 0.99
CACNA1AO00555 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1AO00555 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CACNA1AO00555 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1AO00555 RCN1P1-201ENST00000400413 996 ntBASIC21.2■□□□□ 0.98
CACNA1AO00555 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1AO00555 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.2■□□□□ 0.98
CACNA1AO00555 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1AO00555 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
CACNA1AO00555 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CACNA1AO00555 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1AO00555 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.19■□□□□ 0.98
CACNA1AO00555 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1AO00555 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms