Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC188H7C350 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CCDC188H7C350 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.96■■□□□ 1.27
CCDC188H7C350 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.96■■□□□ 1.27
CCDC188H7C350 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC188H7C350 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC188H7C350 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
CCDC188H7C350 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC188H7C350 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC188H7C350 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC188H7C350 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC188H7C350 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC188H7C350 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.95■■□□□ 1.26
CCDC188H7C350 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC188H7C350 DUX4L18-201ENST00000553347 1267 ntBASIC22.95■■□□□ 1.26
CCDC188H7C350 AC074183.2-201ENST00000623112 922 ntBASIC22.95■■□□□ 1.26
CCDC188H7C350 AC026310.3-201ENST00000625186 2373 ntBASIC22.95■■□□□ 1.26
CCDC188H7C350 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
CCDC188H7C350 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC188H7C350 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC188H7C350 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC188H7C350 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC188H7C350 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.94■■□□□ 1.26
CCDC188H7C350 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC188H7C350 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
CCDC188H7C350 LINC01529-204ENST00000636474 1715 ntBASIC22.94■■□□□ 1.26
CCDC188H7C350 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
CCDC188H7C350 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 AC010542.4-201ENST00000563151 1910 ntBASIC22.93■■□□□ 1.26
CCDC188H7C350 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC188H7C350 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC188H7C350 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC188H7C350 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC188H7C350 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.93■■□□□ 1.26
CCDC188H7C350 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
CCDC188H7C350 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC188H7C350 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.92■■□□□ 1.26
CCDC188H7C350 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC188H7C350 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC188H7C350 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC188H7C350 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
CCDC188H7C350 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
CCDC188H7C350 FP325331.1-202ENST00000623531 1380 ntBASIC22.91■■□□□ 1.26
CCDC188H7C350 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 FAM99A-202ENST00000538190 1989 ntBASIC22.91■■□□□ 1.26
CCDC188H7C350 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
CCDC188H7C350 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC188H7C350 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.91■■□□□ 1.26
CCDC188H7C350 SNX5-217ENST00000606557 1087 ntBASIC22.91■■□□□ 1.26
CCDC188H7C350 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC188H7C350 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.91■■□□□ 1.26
CCDC188H7C350 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.91■■□□□ 1.26
CCDC188H7C350 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
CCDC188H7C350 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC188H7C350 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC188H7C350 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.9■■□□□ 1.26
CCDC188H7C350 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CCDC188H7C350 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC188H7C350 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC188H7C350 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.9■■□□□ 1.26
CCDC188H7C350 BHLHE23-202ENST00000612929 1109 ntBASIC22.9■■□□□ 1.26
CCDC188H7C350 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC188H7C350 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC188H7C350 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC188H7C350 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC188H7C350 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC188H7C350 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.89■■□□□ 1.25
CCDC188H7C350 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC188H7C350 LINC01960-201ENST00000563759 1884 ntBASIC22.89■■□□□ 1.25
CCDC188H7C350 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
CCDC188H7C350 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.89■■□□□ 1.25
CCDC188H7C350 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 PVT1_1.1-201ENST00000615125 194 ntBASIC22.88■■□□□ 1.25
CCDC188H7C350 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC188H7C350 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC188H7C350 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC188H7C350 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC188H7C350 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CCDC188H7C350 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC188H7C350 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms