Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 GCSHP5-201ENST00000443090 522 ntBASIC21.38■■□□□ 1.01
CNOT1A5YKK6 RNA5SP413-201ENST00000516373 109 ntBASIC21.38■■□□□ 1.01
CNOT1A5YKK6 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CNOT1A5YKK6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC098590.1-201ENST00000468126 897 ntBASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC231657.2-201ENST00000624556 255 ntBASIC21.37■■□□□ 1.01
CNOT1A5YKK6 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CNOT1A5YKK6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 KRT18P29-201ENST00000397031 1267 ntBASIC21.36■■□□□ 1.01
CNOT1A5YKK6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
CNOT1A5YKK6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.36■■□□□ 1.01
CNOT1A5YKK6 FP325331.1-202ENST00000623531 1380 ntBASIC21.36■■□□□ 1.01
CNOT1A5YKK6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CNOT1A5YKK6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 SMUG1P1-201ENST00000590640 811 ntBASIC21.34■■□□□ 1.01
CNOT1A5YKK6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 ALDH1A3-203ENST00000557963 1670 ntBASIC21.34■■□□□ 1.01
CNOT1A5YKK6 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
CNOT1A5YKK6 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.33■■□□□ 1.01
CNOT1A5YKK6 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.33■■□□□ 1.01
CNOT1A5YKK6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.33■■□□□ 1.01
CNOT1A5YKK6 AC133041.1-202ENST00000642053 222 ntBASIC21.33■■□□□ 1.01
CNOT1A5YKK6 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CNOT1A5YKK6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CNOT1A5YKK6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
CNOT1A5YKK6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.33■■□□□ 1
CNOT1A5YKK6 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.33■■□□□ 1
CNOT1A5YKK6 MIR6089-201ENST00000616698 64 ntBASIC21.33■■□□□ 1
CNOT1A5YKK6 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.33■■□□□ 1
CNOT1A5YKK6 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
CNOT1A5YKK6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CNOT1A5YKK6 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CNOT1A5YKK6 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CNOT1A5YKK6 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.32■■□□□ 1
CNOT1A5YKK6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.32■■□□□ 1
CNOT1A5YKK6 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.32■■□□□ 1
CNOT1A5YKK6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CNOT1A5YKK6 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.31■■□□□ 1
CNOT1A5YKK6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.31■■□□□ 1
CNOT1A5YKK6 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.31■■□□□ 1
CNOT1A5YKK6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CNOT1A5YKK6 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.31■■□□□ 1
CNOT1A5YKK6 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CNOT1A5YKK6 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.31■■□□□ 1
CNOT1A5YKK6 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CNOT1A5YKK6 UBE2DNL-204ENST00000602536 740 ntBASIC21.31■■□□□ 1
CNOT1A5YKK6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CNOT1A5YKK6 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.31■■□□□ 1
CNOT1A5YKK6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.31■■□□□ 1
CNOT1A5YKK6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.3■■□□□ 1
CNOT1A5YKK6 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.3■■□□□ 1
CNOT1A5YKK6 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CNOT1A5YKK6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms