Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 KRT8P25-201ENST00000473150 1456 ntBASIC12.3□□□□□ -0.44
RFC3P40938 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
RFC3P40938 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 MPV17-209ENST00000405983 859 ntTSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 HNRNPA1P21-201ENST00000424115 961 ntBASIC12.3□□□□□ -0.44
RFC3P40938 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 BCL2L12P1-201ENST00000508390 733 ntBASIC12.3□□□□□ -0.44
RFC3P40938 IGHEP2-201ENST00000519308 1256 ntBASIC12.3□□□□□ -0.44
RFC3P40938 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC12.3□□□□□ -0.44
RFC3P40938 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC12.3□□□□□ -0.44
RFC3P40938 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 RHPN1-AS1-201ENST00000518049 1918 ntBASIC12.3□□□□□ -0.44
RFC3P40938 GUCY2EP-203ENST00000531117 1918 ntBASIC12.3□□□□□ -0.44
RFC3P40938 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
RFC3P40938 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC12.3□□□□□ -0.44
RFC3P40938 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 ZNF493-208ENST00000599461 1769 ntBASIC12.3□□□□□ -0.44
RFC3P40938 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC12.3□□□□□ -0.44
RFC3P40938 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RFC3P40938 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
RFC3P40938 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.29□□□□□ -0.44
RFC3P40938 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
RFC3P40938 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
RFC3P40938 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
RFC3P40938 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.29□□□□□ -0.44
RFC3P40938 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RFC3P40938 SIRPB3P-201ENST00000340424 1216 ntBASIC12.29□□□□□ -0.44
RFC3P40938 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms