Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 AC009102.2-201ENST00000606772 1639 ntBASIC22.14■■□□□ 1.14
PCDHB1Q9Y5F3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHB1Q9Y5F3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 AC012676.1-201ENST00000574705 1949 ntBASIC22.14■■□□□ 1.13
PCDHB1Q9Y5F3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHB1Q9Y5F3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 AC097381.1-201ENST00000429019 1296 ntBASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 AC087623.3-201ENST00000607047 1098 ntBASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB1Q9Y5F3 LINC01529-204ENST00000636474 1715 ntBASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB1Q9Y5F3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 SERBP1P1-201ENST00000396021 1160 ntBASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 CA15P2-201ENST00000611168 834 ntBASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB1Q9Y5F3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 AL162430.1-201ENST00000480705 870 ntBASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB1Q9Y5F3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.08■■□□□ 1.13
PCDHB1Q9Y5F3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHB1Q9Y5F3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHB1Q9Y5F3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHB1Q9Y5F3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
PCDHB1Q9Y5F3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 C17orf82-201ENST00000623772 1530 ntBASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 DUX4L4-201ENST00000566884 1269 ntBASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 RASA4CP-201ENST00000424092 1398 ntBASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 C9orf163-202ENST00000624034 2573 ntBASIC22.07■■□□□ 1.12
PCDHB1Q9Y5F3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 AC092171.4-201ENST00000609130 632 ntBASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PCDHB1Q9Y5F3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms