Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPH3AQ9Y2J0 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 MIR4767-201ENST00000582827 78 ntBASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.19■□□□□ 0.82
RPH3AQ9Y2J0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 AL138724.1-201ENST00000606771 1088 ntBASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPH3AQ9Y2J0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 AC011298.3-201ENST00000615796 283 ntBASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RPH3AQ9Y2J0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPH3AQ9Y2J0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 AC133637.1-201ENST00000624115 1537 ntBASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.15■□□□□ 0.82
RPH3AQ9Y2J0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RPH3AQ9Y2J0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
RPH3AQ9Y2J0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
RPH3AQ9Y2J0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms