Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
NPC1L1Q9UHC9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
NPC1L1Q9UHC9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
NPC1L1Q9UHC9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NPC1L1Q9UHC9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPC1L1Q9UHC9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC30.07■■■□□ 2.4
NPC1L1Q9UHC9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPC1L1Q9UHC9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPC1L1Q9UHC9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPC1L1Q9UHC9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 GRAMD4P4-201ENST00000613563 1115 ntBASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPC1L1Q9UHC9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 AC027682.1-201ENST00000562846 899 ntBASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 AC010525.1-201ENST00000585559 441 ntBASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 AL136967.2-201ENST00000623968 743 ntBASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC30.05■■■□□ 2.4
NPC1L1Q9UHC9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 AF213884.3-201ENST00000563833 479 ntBASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 AC005837.3-201ENST00000612163 286 ntBASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NPC1L1Q9UHC9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 AC233992.3-201ENST00000607491 485 ntBASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 AC091305.1-201ENST00000479476 895 ntBASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 MPST-208ENST00000628507 698 ntTSL 5 BASIC30.03■■■□□ 2.4
NPC1L1Q9UHC9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
NPC1L1Q9UHC9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC30.01■■■□□ 2.4
NPC1L1Q9UHC9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.4
NPC1L1Q9UHC9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.4
NPC1L1Q9UHC9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
NPC1L1Q9UHC9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC30■■■□□ 2.39
NPC1L1Q9UHC9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
NPC1L1Q9UHC9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
NPC1L1Q9UHC9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPC1L1Q9UHC9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30■■■□□ 2.39
NPC1L1Q9UHC9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 RASA4CP-201ENST00000424092 1398 ntBASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC29.99■■■□□ 2.39
NPC1L1Q9UHC9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 AP005435.1-201ENST00000529293 1178 ntBASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC29.98■■■□□ 2.39
NPC1L1Q9UHC9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 MAG-206ENST00000597035 542 ntTSL 4 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
NPC1L1Q9UHC9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPC1L1Q9UHC9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms