Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 AC092296.2-201ENST00000589470 999 ntBASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 FAM99A-202ENST00000538190 1989 ntBASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.44■□□□□ 0.7
COMMD3Q9UBI1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 ZNRF2P2-203ENST00000454624 420 ntBASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.43■□□□□ 0.7
COMMD3Q9UBI1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 AC005229.4-201ENST00000610085 2198 ntBASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COMMD3Q9UBI1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
COMMD3Q9UBI1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 ECEL1P2-201ENST00000461596 1295 ntBASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COMMD3Q9UBI1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.39■□□□□ 0.69
COMMD3Q9UBI1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COMMD3Q9UBI1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.39■□□□□ 0.69
COMMD3Q9UBI1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COMMD3Q9UBI1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms