Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 AC087623.3-201ENST00000607047 1098 ntBASIC20.32■□□□□ 0.84
LRFN1Q9P244 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.32■□□□□ 0.84
LRFN1Q9P244 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRFN1Q9P244 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRFN1Q9P244 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRFN1Q9P244 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRFN1Q9P244 AL353803.4-201ENST00000565882 1934 ntBASIC20.31■□□□□ 0.84
LRFN1Q9P244 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRFN1Q9P244 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRFN1Q9P244 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LRFN1Q9P244 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 MIR572-201ENST00000384983 95 ntBASIC20.3■□□□□ 0.84
LRFN1Q9P244 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.3■□□□□ 0.84
LRFN1Q9P244 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.3■□□□□ 0.84
LRFN1Q9P244 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
LRFN1Q9P244 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRFN1Q9P244 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 AP005435.1-201ENST00000529293 1178 ntBASIC20.29■□□□□ 0.84
LRFN1Q9P244 AC092666.2-201ENST00000613287 246 ntBASIC20.29■□□□□ 0.84
LRFN1Q9P244 AL358852.1-201ENST00000623174 1268 ntBASIC20.29■□□□□ 0.84
LRFN1Q9P244 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRFN1Q9P244 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.29■□□□□ 0.84
LRFN1Q9P244 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRFN1Q9P244 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LRFN1Q9P244 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LRFN1Q9P244 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.28■□□□□ 0.84
LRFN1Q9P244 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRFN1Q9P244 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRFN1Q9P244 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.28■□□□□ 0.84
LRFN1Q9P244 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.28■□□□□ 0.84
LRFN1Q9P244 AC004687.1-201ENST00000579003 1625 ntBASIC20.27■□□□□ 0.84
LRFN1Q9P244 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LRFN1Q9P244 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LRFN1Q9P244 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.27■□□□□ 0.84
LRFN1Q9P244 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 AC104564.3-201ENST00000582367 638 ntBASIC20.27■□□□□ 0.84
LRFN1Q9P244 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.27■□□□□ 0.84
LRFN1Q9P244 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRFN1Q9P244 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.27■□□□□ 0.83
LRFN1Q9P244 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
LRFN1Q9P244 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRFN1Q9P244 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRFN1Q9P244 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRFN1Q9P244 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRFN1Q9P244 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRFN1Q9P244 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.26■□□□□ 0.83
LRFN1Q9P244 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRFN1Q9P244 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRFN1Q9P244 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.25■□□□□ 0.83
LRFN1Q9P244 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LRFN1Q9P244 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
LRFN1Q9P244 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms