Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
USP42Q9H9J4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
USP42Q9H9J4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.39■■■□□ 2.13
USP42Q9H9J4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.39■■■□□ 2.13
USP42Q9H9J4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
USP42Q9H9J4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.39■■■□□ 2.13
USP42Q9H9J4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
USP42Q9H9J4 AC006015.1-201ENST00000429970 570 ntBASIC28.39■■■□□ 2.13
USP42Q9H9J4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
USP42Q9H9J4 RAP2CP1-201ENST00000605103 478 ntBASIC28.39■■■□□ 2.13
USP42Q9H9J4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.13
USP42Q9H9J4 AC135731.1-201ENST00000569415 2548 ntBASIC28.39■■■□□ 2.13
USP42Q9H9J4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
USP42Q9H9J4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 AP005435.1-201ENST00000529293 1178 ntBASIC28.38■■■□□ 2.13
USP42Q9H9J4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP42Q9H9J4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
USP42Q9H9J4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP42Q9H9J4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP42Q9H9J4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP42Q9H9J4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC28.37■■■□□ 2.13
USP42Q9H9J4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
USP42Q9H9J4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
USP42Q9H9J4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP42Q9H9J4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP42Q9H9J4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
USP42Q9H9J4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP42Q9H9J4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
USP42Q9H9J4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.36■■■□□ 2.13
USP42Q9H9J4 AC080038.1-201ENST00000611274 1154 ntBASIC28.36■■■□□ 2.13
USP42Q9H9J4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 DUX4L4-201ENST00000566884 1269 ntBASIC28.35■■■□□ 2.13
USP42Q9H9J4 AC105233.4-201ENST00000642045 216 ntBASIC28.35■■■□□ 2.13
USP42Q9H9J4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
USP42Q9H9J4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
USP42Q9H9J4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USP42Q9H9J4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP42Q9H9J4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP42Q9H9J4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.34■■■□□ 2.13
USP42Q9H9J4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
USP42Q9H9J4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
USP42Q9H9J4 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
USP42Q9H9J4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
USP42Q9H9J4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
USP42Q9H9J4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
USP42Q9H9J4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.33■■■□□ 2.13
USP42Q9H9J4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
USP42Q9H9J4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
USP42Q9H9J4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USP42Q9H9J4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
USP42Q9H9J4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC28.32■■■□□ 2.12
USP42Q9H9J4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.32■■■□□ 2.12
USP42Q9H9J4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USP42Q9H9J4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 FP325331.1-202ENST00000623531 1380 ntBASIC28.31■■■□□ 2.12
USP42Q9H9J4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.31■■■□□ 2.12
USP42Q9H9J4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP42Q9H9J4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
USP42Q9H9J4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
USP42Q9H9J4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
USP42Q9H9J4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
USP42Q9H9J4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.3■■■□□ 2.12
USP42Q9H9J4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms