Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 AC110285.7-201ENST00000624417 1536 ntBASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CLRN3Q8NCR9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLRN3Q8NCR9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLRN3Q8NCR9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.65■□□□□ 0.42
CLRN3Q8NCR9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 CAHM-201ENST00000604200 896 ntBASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN3Q8NCR9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN3Q8NCR9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms