Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC241585.3-202ENST00000628937 1088 ntBASIC19.53■□□□□ 0.72
SKA3Q8IX90 AC245100.8-202ENST00000629247 1058 ntBASIC19.53■□□□□ 0.72
SKA3Q8IX90 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA3Q8IX90 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SKA3Q8IX90 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.52■□□□□ 0.72
SKA3Q8IX90 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SKA3Q8IX90 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 AL136116.3-201ENST00000402907 1138 ntBASIC19.52■□□□□ 0.72
SKA3Q8IX90 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA3Q8IX90 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA3Q8IX90 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SKA3Q8IX90 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SKA3Q8IX90 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.52■□□□□ 0.71
SKA3Q8IX90 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 C9orf163-202ENST00000624034 2573 ntBASIC19.51■□□□□ 0.71
SKA3Q8IX90 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA3Q8IX90 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA3Q8IX90 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA3Q8IX90 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SKA3Q8IX90 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SKA3Q8IX90 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA3Q8IX90 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA3Q8IX90 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA3Q8IX90 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA3Q8IX90 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 AC008406.3-201ENST00000620001 1374 ntBASIC19.5■□□□□ 0.71
SKA3Q8IX90 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 AC009086.3-201ENST00000623486 1008 ntBASIC19.5■□□□□ 0.71
SKA3Q8IX90 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA3Q8IX90 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA3Q8IX90 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA3Q8IX90 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA3Q8IX90 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA3Q8IX90 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA3Q8IX90 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA3Q8IX90 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA3Q8IX90 AC006455.2-201ENST00000429931 906 ntBASIC19.49■□□□□ 0.71
SKA3Q8IX90 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SKA3Q8IX90 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.49■□□□□ 0.71
SKA3Q8IX90 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.49■□□□□ 0.71
SKA3Q8IX90 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SKA3Q8IX90 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA3Q8IX90 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA3Q8IX90 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.48■□□□□ 0.71
SKA3Q8IX90 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA3Q8IX90 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA3Q8IX90 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA3Q8IX90 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SKA3Q8IX90 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA3Q8IX90 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA3Q8IX90 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA3Q8IX90 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.48■□□□□ 0.71
SKA3Q8IX90 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA3Q8IX90 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA3Q8IX90 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.47■□□□□ 0.71
SKA3Q8IX90 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SKA3Q8IX90 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA3Q8IX90 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA3Q8IX90 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.47■□□□□ 0.71
SKA3Q8IX90 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.47■□□□□ 0.71
SKA3Q8IX90 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SKA3Q8IX90 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.46■□□□□ 0.71
SKA3Q8IX90 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.46■□□□□ 0.71
SKA3Q8IX90 AC092171.4-201ENST00000609130 632 ntBASIC19.46■□□□□ 0.71
SKA3Q8IX90 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA3Q8IX90 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
SKA3Q8IX90 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA3Q8IX90 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA3Q8IX90 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.45■□□□□ 0.7
SKA3Q8IX90 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA3Q8IX90 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA3Q8IX90 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.45■□□□□ 0.7
SKA3Q8IX90 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA3Q8IX90 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms