Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CDH12P55289 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH12P55289 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.58■□□□□ 0.89
CDH12P55289 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH12P55289 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH12P55289 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.58■□□□□ 0.89
CDH12P55289 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH12P55289 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH12P55289 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH12P55289 AC007375.3-201ENST00000600936 2314 ntBASIC20.58■□□□□ 0.88
CDH12P55289 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH12P55289 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.58■□□□□ 0.88
CDH12P55289 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CDH12P55289 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH12P55289 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH12P55289 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH12P55289 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH12P55289 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH12P55289 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
CDH12P55289 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH12P55289 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CDH12P55289 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH12P55289 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.56■□□□□ 0.88
CDH12P55289 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CDH12P55289 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH12P55289 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH12P55289 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.56■□□□□ 0.88
CDH12P55289 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH12P55289 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CDH12P55289 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH12P55289 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH12P55289 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH12P55289 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH12P55289 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH12P55289 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.55■□□□□ 0.88
CDH12P55289 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH12P55289 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH12P55289 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CDH12P55289 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH12P55289 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH12P55289 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH12P55289 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.54■□□□□ 0.88
CDH12P55289 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CDH12P55289 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 AC139530.1-201ENST00000575312 1977 ntBASIC20.54■□□□□ 0.88
CDH12P55289 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CDH12P55289 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH12P55289 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CDH12P55289 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
CDH12P55289 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CDH12P55289 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH12P55289 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.53■□□□□ 0.88
CDH12P55289 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CDH12P55289 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH12P55289 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH12P55289 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH12P55289 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH12P55289 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CDH12P55289 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH12P55289 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH12P55289 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.52■□□□□ 0.88
CDH12P55289 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH12P55289 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH12P55289 AC092053.2-201ENST00000640557 1818 ntBASIC20.52■□□□□ 0.88
CDH12P55289 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CDH12P55289 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms