Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.44■□□□□ 0.7
LMX1BO60663 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.44■□□□□ 0.7
LMX1BO60663 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LMX1BO60663 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.44■□□□□ 0.7
LMX1BO60663 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.44■□□□□ 0.7
LMX1BO60663 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1BO60663 AC133561.4-201ENST00000566112 224 ntBASIC19.43■□□□□ 0.7
LMX1BO60663 LINC00526-201ENST00000581067 1875 ntBASIC19.43■□□□□ 0.7
LMX1BO60663 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LMX1BO60663 AL353803.4-201ENST00000565882 1934 ntBASIC19.43■□□□□ 0.7
LMX1BO60663 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.42■□□□□ 0.7
LMX1BO60663 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.42■□□□□ 0.7
LMX1BO60663 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LMX1BO60663 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1BO60663 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1BO60663 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1BO60663 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1BO60663 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1BO60663 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1BO60663 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
LMX1BO60663 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LMX1BO60663 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1BO60663 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1BO60663 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.4■□□□□ 0.7
LMX1BO60663 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1BO60663 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
LMX1BO60663 ECEL1P1-201ENST00000373592 1742 ntBASIC19.39■□□□□ 0.7
LMX1BO60663 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.39■□□□□ 0.7
LMX1BO60663 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1BO60663 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.39■□□□□ 0.7
LMX1BO60663 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1BO60663 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
LMX1BO60663 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.39■□□□□ 0.69
LMX1BO60663 SNX5-217ENST00000606557 1087 ntBASIC19.39■□□□□ 0.69
LMX1BO60663 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LMX1BO60663 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LMX1BO60663 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.39■□□□□ 0.69
LMX1BO60663 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1BO60663 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.38■□□□□ 0.69
LMX1BO60663 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.38■□□□□ 0.69
LMX1BO60663 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1BO60663 AL512631.2-201ENST00000604634 923 ntBASIC19.38■□□□□ 0.69
LMX1BO60663 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.38■□□□□ 0.69
LMX1BO60663 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.38■□□□□ 0.69
LMX1BO60663 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LMX1BO60663 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
LMX1BO60663 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
LMX1BO60663 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LMX1BO60663 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.37■□□□□ 0.69
LMX1BO60663 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.37■□□□□ 0.69
LMX1BO60663 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LMX1BO60663 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms