Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC39.05■■■■□ 3.84
CCDC88BA6NC98 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 AC073111.5-205ENST00000641717 521 ntBASIC39.04■■■■□ 3.84
CCDC88BA6NC98 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC39.04■■■■□ 3.84
CCDC88BA6NC98 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC39.03■■■■□ 3.84
CCDC88BA6NC98 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
CCDC88BA6NC98 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC39.03■■■■□ 3.84
CCDC88BA6NC98 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 CDCA4P2-201ENST00000441182 718 ntBASIC39.02■■■■□ 3.84
CCDC88BA6NC98 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 AC080038.1-201ENST00000611274 1154 ntBASIC39.02■■■■□ 3.84
CCDC88BA6NC98 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
CCDC88BA6NC98 AC138932.3-201ENST00000567634 1902 ntBASIC39.01■■■■□ 3.84
CCDC88BA6NC98 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC39.01■■■■□ 3.84
CCDC88BA6NC98 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC39.01■■■■□ 3.84
CCDC88BA6NC98 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC39.01■■■■□ 3.83
CCDC88BA6NC98 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC39■■■■□ 3.83
CCDC88BA6NC98 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
CCDC88BA6NC98 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC39■■■■□ 3.83
CCDC88BA6NC98 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
CCDC88BA6NC98 TK2-208ENST00000545043 1120 ntTSL 2 BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
CCDC88BA6NC98 STX7-201ENST00000367937 1090 ntTSL 5 BASIC38.98■■■■□ 3.83
CCDC88BA6NC98 AP004607.4-201ENST00000530158 1459 ntBASIC38.98■■■■□ 3.83
CCDC88BA6NC98 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC38.98■■■■□ 3.83
CCDC88BA6NC98 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC38.98■■■■□ 3.83
CCDC88BA6NC98 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC38.98■■■■□ 3.83
CCDC88BA6NC98 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC38.98■■■■□ 3.83
CCDC88BA6NC98 RARA-203ENST00000394086 2008 ntTSL 2 BASIC38.97■■■■□ 3.83
CCDC88BA6NC98 HSCB-202ENST00000398941 955 ntTSL 2 BASIC38.97■■■■□ 3.83
CCDC88BA6NC98 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC38.97■■■■□ 3.83
CCDC88BA6NC98 AC004854.2-201ENST00000608450 1441 ntBASIC38.96■■■■□ 3.83
CCDC88BA6NC98 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 GALNS-213ENST00000569433 723 ntTSL 3 BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
CCDC88BA6NC98 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 DBI-210ENST00000542275 757 ntTSL 5 BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 MED17-227ENST00000640521 2047 ntTSL 5 BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC38.95■■■■□ 3.83
CCDC88BA6NC98 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
CCDC88BA6NC98 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
CCDC88BA6NC98 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
CCDC88BA6NC98 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC38.93■■■■□ 3.82
CCDC88BA6NC98 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
CCDC88BA6NC98 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC38.93■■■■□ 3.82
CCDC88BA6NC98 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
CCDC88BA6NC98 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
CCDC88BA6NC98 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC38.92■■■■□ 3.82
CCDC88BA6NC98 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC38.91■■■■□ 3.82
CCDC88BA6NC98 AC137761.2-201ENST00000561729 223 ntBASIC38.91■■■■□ 3.82
CCDC88BA6NC98 AC145350.3-201ENST00000569033 163 ntBASIC38.91■■■■□ 3.82
CCDC88BA6NC98 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
CCDC88BA6NC98 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC38.9■■■■□ 3.82
CCDC88BA6NC98 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC38.9■■■■□ 3.82
CCDC88BA6NC98 SHD-204ENST00000599689 1729 ntTSL 5 BASIC38.9■■■■□ 3.82
CCDC88BA6NC98 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC38.89■■■■□ 3.82
CCDC88BA6NC98 AC142381.3-201ENST00000568208 1670 ntBASIC38.89■■■■□ 3.82
CCDC88BA6NC98 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
CCDC88BA6NC98 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
CCDC88BA6NC98 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC38.89■■■■□ 3.82
CCDC88BA6NC98 WWOX-218ENST00000627394 894 ntTSL 5 BASIC38.89■■■■□ 3.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms