Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 C2-209ENST00000452323 1999 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 STPG4-201ENST00000294947 1621 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SMARCA1P28370 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 DMKN-203ENST00000402589 935 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 AIFM1P1-201ENST00000413342 1841 ntBASIC15.3■□□□□ 0.04
SMARCA1P28370 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 HCG27-204ENST00000424675 895 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 GAPDHP29-201ENST00000429913 985 ntBASIC15.3■□□□□ 0.04
SMARCA1P28370 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 DRD3-204ENST00000467632 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 RPL29P2-201ENST00000488409 460 ntBASIC15.3■□□□□ 0.04
SMARCA1P28370 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 EXTL3-AS1-204ENST00000523789 543 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 NFATC4-212ENST00000554473 1382 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15.3■□□□□ 0.04
SMARCA1P28370 MAX-212ENST00000555932 1673 ntTSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC15.3■□□□□ 0.04
SMARCA1P28370 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC15.3■□□□□ 0.04
SMARCA1P28370 CYP2B7P-202ENST00000593298 1087 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 PEBP1P2-201ENST00000603980 558 ntBASIC15.3■□□□□ 0.04
SMARCA1P28370 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SMARCA1P28370 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SMARCA1P28370 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SMARCA1P28370 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 FAM114A2-211ENST00000520667 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 PCDHA6-201ENST00000378126 3267 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 CLUHP8-201ENST00000547527 1485 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 FAM226B-201ENST00000602508 1490 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SMARCA1P28370 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC15.29■□□□□ 0.04
SMARCA1P28370 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 KRT8P30-201ENST00000432100 650 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 GOLGA6L16P-201ENST00000441780 1299 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AC006548.2-201ENST00000605217 529 ntBASIC15.29■□□□□ 0.04
SMARCA1P28370 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms