Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC12.81□□□□□ -0.36
RAE1P78406 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC12.81□□□□□ -0.36
RAE1P78406 ZSCAN5DP-201ENST00000600684 1488 ntBASIC12.81□□□□□ -0.36
RAE1P78406 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.81□□□□□ -0.36
RAE1P78406 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.81□□□□□ -0.36
RAE1P78406 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.81□□□□□ -0.36
RAE1P78406 AP000911.2-201ENST00000534330 502 ntBASIC12.81□□□□□ -0.36
RAE1P78406 IQSEC3P1-201ENST00000538799 536 ntBASIC12.81□□□□□ -0.36
RAE1P78406 VENTXP3-201ENST00000546480 773 ntBASIC12.81□□□□□ -0.36
RAE1P78406 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.81□□□□□ -0.36
RAE1P78406 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC12.81□□□□□ -0.36
RAE1P78406 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 AC103691.2-201ENST00000618824 433 ntBASIC12.81□□□□□ -0.36
RAE1P78406 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC12.81□□□□□ -0.36
RAE1P78406 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
RAE1P78406 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RAE1P78406 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
RAE1P78406 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
RAE1P78406 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.81□□□□□ -0.36
RAE1P78406 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
RAE1P78406 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
RAE1P78406 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RAE1P78406 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 SFTPA1-203ENST00000428376 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TBC1D3F-201ENST00000620210 2117 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TPI1P3-201ENST00000335020 740 ntBASIC12.8□□□□□ -0.36
RAE1P78406 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.8□□□□□ -0.36
RAE1P78406 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 AC026316.1-201ENST00000398900 414 ntBASIC12.8□□□□□ -0.36
RAE1P78406 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC12.8□□□□□ -0.36
RAE1P78406 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC12.8□□□□□ -0.36
RAE1P78406 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 UPF3AP2-201ENST00000457924 1132 ntBASIC12.8□□□□□ -0.36
RAE1P78406 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 AC105129.2-201ENST00000559536 390 ntBASIC12.8□□□□□ -0.36
RAE1P78406 RN7SL357P-201ENST00000581065 298 ntBASIC12.8□□□□□ -0.36
RAE1P78406 MIR3180-2-201ENST00000581748 88 ntBASIC12.8□□□□□ -0.36
RAE1P78406 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
RAE1P78406 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 AC140113.1-201ENST00000603467 169 ntBASIC12.8□□□□□ -0.36
RAE1P78406 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 AC092171.5-201ENST00000608012 942 ntBASIC12.8□□□□□ -0.36
RAE1P78406 AP000322.3-201ENST00000608665 388 ntBASIC12.8□□□□□ -0.36
RAE1P78406 AC007881.3-201ENST00000608897 607 ntBASIC12.8□□□□□ -0.36
RAE1P78406 AC087392.5-201ENST00000612517 489 ntBASIC12.8□□□□□ -0.36
RAE1P78406 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 MPPE1-204ENST00000344987 1831 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 AIFM1P1-201ENST00000413342 1841 ntBASIC12.8□□□□□ -0.36
RAE1P78406 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 SRL-202ENST00000537996 1814 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms