Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 AL450468.2-201ENST00000565955 1889 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 CFAP65-204ENST00000410037 2703 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SMARCA1P28370 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC15.42■□□□□ 0.06
SMARCA1P28370 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.42■□□□□ 0.06
SMARCA1P28370 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 RHCE-203ENST00000346452 971 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SMARCA1P28370 NRADDP-201ENST00000437305 691 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 NSD1-211ENST00000511258 809 ntTSL 3 BASIC15.42■□□□□ 0.06
SMARCA1P28370 RNA5SP420-201ENST00000516997 137 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 AC078814.4-201ENST00000546650 327 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 MIR5091-201ENST00000578707 93 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC15.42■□□□□ 0.06
SMARCA1P28370 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC15.42■□□□□ 0.06
SMARCA1P28370 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 AC138969.2-201ENST00000532739 9932 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC15.42■□□□□ 0.06
SMARCA1P28370 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SMARCA1P28370 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SMARCA1P28370 AC004241.5-201ENST00000623870 2448 ntBASIC15.42■□□□□ 0.06
SMARCA1P28370 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.41■□□□□ 0.06
SMARCA1P28370 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC15.41■□□□□ 0.06
SMARCA1P28370 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 OR10N1P-201ENST00000392758 869 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 SSR4P1-201ENST00000415143 412 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 AC063952.3-201ENST00000467756 308 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC016650.1-201ENST00000502834 708 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC15.41■□□□□ 0.06
SMARCA1P28370 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 METTL23-211ENST00000589977 617 ntTSL 3 BASIC15.41■□□□□ 0.06
SMARCA1P28370 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.41■□□□□ 0.06
SMARCA1P28370 MDC1-209ENST00000613547 830 ntTSL 5 BASIC15.41■□□□□ 0.06
SMARCA1P28370 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 FO393412.1-201ENST00000619841 382 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 PPT1-213ENST00000641319 2388 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 PPP1R26P2-201ENST00000611403 3595 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 DLX4-206ENST00000611342 1662 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 GHET1-201ENST00000627071 1906 ntBASIC15.41■□□□□ 0.06
SMARCA1P28370 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC15.41■□□□□ 0.06
SMARCA1P28370 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SMARCA1P28370 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 KRT8P5-201ENST00000592443 1458 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms