Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRC42Q9Y546 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 AC044849.2-201ENST00000606596 710 ntBASIC20.97■□□□□ 0.95
LRRC42Q9Y546 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRC42Q9Y546 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 MIR219A2-201ENST00000608502 1504 ntBASIC20.96■□□□□ 0.95
LRRC42Q9Y546 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.96■□□□□ 0.95
LRRC42Q9Y546 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRC42Q9Y546 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC42Q9Y546 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRC42Q9Y546 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 AC244015.2-201ENST00000616358 1861 ntBASIC20.92■□□□□ 0.94
LRRC42Q9Y546 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC42Q9Y546 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.91■□□□□ 0.94
LRRC42Q9Y546 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 AC148477.6-201ENST00000623746 465 ntBASIC20.9■□□□□ 0.94
LRRC42Q9Y546 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms