Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
AP4E1Q9UPM8 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
AP4E1Q9UPM8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
AP4E1Q9UPM8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.08■■□□□ 1.28
AP4E1Q9UPM8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
AP4E1Q9UPM8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 C1orf229-201ENST00000623686 2258 ntBASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
AP4E1Q9UPM8 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 AC009086.3-201ENST00000623486 1008 ntBASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 AC241377.3-202ENST00000626088 1088 ntBASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 AC241585.3-202ENST00000628937 1088 ntBASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 AC245100.8-202ENST00000629247 1058 ntBASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.05■■□□□ 1.28
AP4E1Q9UPM8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 AC131281.2-201ENST00000520478 145 ntBASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.04■■□□□ 1.28
AP4E1Q9UPM8 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 SRD5A1P1-201ENST00000442297 786 ntBASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 AC099791.2-201ENST00000605725 427 ntBASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 MIR4466-201ENST00000606121 54 ntBASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
AP4E1Q9UPM8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 AC006455.2-201ENST00000429931 906 ntBASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 AC131212.1-201ENST00000613771 668 ntBASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.02■■□□□ 1.28
AP4E1Q9UPM8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.27
AP4E1Q9UPM8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
AP4E1Q9UPM8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23■■□□□ 1.27
AP4E1Q9UPM8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23■■□□□ 1.27
AP4E1Q9UPM8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
AP4E1Q9UPM8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.99■■□□□ 1.27
AP4E1Q9UPM8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
AP4E1Q9UPM8 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms