Protein–RNA interactions for Protein: Q9P2I0

CPSF2, Cleavage and polyadenylation specificity factor subunit 2, humanhuman

Known RBP Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2Q9P2I0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.24■■□□□ 1.15
CPSF2Q9P2I0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 AC012354.3-201ENST00000623734 483 ntBASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.23■■□□□ 1.15
CPSF2Q9P2I0 AC079630.1-202ENST00000618127 1840 ntBASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 GUSBP5-202ENST00000510805 1989 ntBASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.22■■□□□ 1.15
CPSF2Q9P2I0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 AL033527.3-201ENST00000566366 1196 ntBASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CPSF2Q9P2I0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 LINC00565-201ENST00000562710 2331 ntBASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CPSF2Q9P2I0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CPSF2Q9P2I0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CPSF2Q9P2I0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 KRT8P33-201ENST00000508125 1423 ntBASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 AC004448.1-201ENST00000458332 883 ntBASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CPSF2Q9P2I0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms