Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.33■■□□□ 1.16
VPS11Q9H270 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
VPS11Q9H270 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.33■■□□□ 1.16
VPS11Q9H270 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.33■■□□□ 1.16
VPS11Q9H270 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
VPS11Q9H270 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS11Q9H270 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
VPS11Q9H270 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS11Q9H270 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS11Q9H270 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS11Q9H270 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS11Q9H270 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.32■■□□□ 1.16
VPS11Q9H270 AC004448.1-201ENST00000458332 883 ntBASIC22.32■■□□□ 1.16
VPS11Q9H270 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.32■■□□□ 1.16
VPS11Q9H270 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
VPS11Q9H270 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
VPS11Q9H270 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
VPS11Q9H270 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.32■■□□□ 1.16
VPS11Q9H270 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS11Q9H270 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS11Q9H270 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS11Q9H270 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS11Q9H270 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
VPS11Q9H270 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS11Q9H270 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.29■■□□□ 1.16
VPS11Q9H270 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS11Q9H270 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 TSPY13P-201ENST00000338964 914 ntBASIC22.29■■□□□ 1.16
VPS11Q9H270 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS11Q9H270 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS11Q9H270 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS11Q9H270 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
VPS11Q9H270 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
VPS11Q9H270 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.27■■□□□ 1.16
VPS11Q9H270 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VPS11Q9H270 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VPS11Q9H270 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
VPS11Q9H270 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.27■■□□□ 1.16
VPS11Q9H270 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS11Q9H270 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.27■■□□□ 1.16
VPS11Q9H270 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VPS11Q9H270 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS11Q9H270 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
VPS11Q9H270 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.15
VPS11Q9H270 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.27■■□□□ 1.15
VPS11Q9H270 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS11Q9H270 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
VPS11Q9H270 AC139530.1-201ENST00000575312 1977 ntBASIC22.26■■□□□ 1.15
VPS11Q9H270 AC092053.2-201ENST00000640557 1818 ntBASIC22.26■■□□□ 1.15
VPS11Q9H270 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS11Q9H270 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS11Q9H270 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
VPS11Q9H270 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
VPS11Q9H270 AL353803.4-201ENST00000565882 1934 ntBASIC22.25■■□□□ 1.15
VPS11Q9H270 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS11Q9H270 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.25■■□□□ 1.15
VPS11Q9H270 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
VPS11Q9H270 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS11Q9H270 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS11Q9H270 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 AL024507.2-201ENST00000606070 2574 ntBASIC22.25■■□□□ 1.15
VPS11Q9H270 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS11Q9H270 C11orf96-202ENST00000528572 1834 ntBASIC22.24■■□□□ 1.15
VPS11Q9H270 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS11Q9H270 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS11Q9H270 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
VPS11Q9H270 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
VPS11Q9H270 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS11Q9H270 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS11Q9H270 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
VPS11Q9H270 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS11Q9H270 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS11Q9H270 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS11Q9H270 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms