Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
ECHDC3Q96DC8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.34■■□□□ 1.17
ECHDC3Q96DC8 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ECHDC3Q96DC8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
ECHDC3Q96DC8 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.16
ECHDC3Q96DC8 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.33■■□□□ 1.16
ECHDC3Q96DC8 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ECHDC3Q96DC8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
ECHDC3Q96DC8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ECHDC3Q96DC8 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 MIR939-201ENST00000401314 82 ntBASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 DUSP8P3-201ENST00000399571 1760 ntBASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.32■■□□□ 1.16
ECHDC3Q96DC8 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 AL136967.2-201ENST00000623968 743 ntBASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ECHDC3Q96DC8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 BX842568.3-201ENST00000418104 571 ntBASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 OR2I1P-207ENST00000453522 948 ntBASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 AF213884.3-201ENST00000563833 479 ntBASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.3■■□□□ 1.16
ECHDC3Q96DC8 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 AC142381.2-201ENST00000566120 298 ntBASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ECHDC3Q96DC8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.28■■□□□ 1.16
ECHDC3Q96DC8 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 SLC47A1P1-202ENST00000449666 945 ntBASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 AC091305.1-201ENST00000479476 895 ntBASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 AC027682.1-201ENST00000562846 899 ntBASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 AC233992.3-201ENST00000607491 485 ntBASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 AC019069.1-201ENST00000610008 1333 ntBASIC22.27■■□□□ 1.16
ECHDC3Q96DC8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
ECHDC3Q96DC8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.26■■□□□ 1.15
ECHDC3Q96DC8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
ECHDC3Q96DC8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms