Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.98■□□□□ 0.63
PTX4Q96A99 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 AF131216.4-201ENST00000638924 1588 ntBASIC18.98■□□□□ 0.63
PTX4Q96A99 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.98■□□□□ 0.63
PTX4Q96A99 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.98■□□□□ 0.63
PTX4Q96A99 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.98■□□□□ 0.63
PTX4Q96A99 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PTX4Q96A99 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTX4Q96A99 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTX4Q96A99 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.97■□□□□ 0.63
PTX4Q96A99 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.97■□□□□ 0.63
PTX4Q96A99 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
PTX4Q96A99 AC144652.1-201ENST00000609974 1624 ntBASIC18.97■□□□□ 0.63
PTX4Q96A99 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.97■□□□□ 0.63
PTX4Q96A99 KRT18P60-201ENST00000312876 1297 ntBASIC18.97■□□□□ 0.63
PTX4Q96A99 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.97■□□□□ 0.63
PTX4Q96A99 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTX4Q96A99 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
PTX4Q96A99 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTX4Q96A99 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTX4Q96A99 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.96■□□□□ 0.63
PTX4Q96A99 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTX4Q96A99 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTX4Q96A99 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
PTX4Q96A99 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.95■□□□□ 0.62
PTX4Q96A99 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 AC120024.1-201ENST00000562672 995 ntBASIC18.95■□□□□ 0.62
PTX4Q96A99 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.95■□□□□ 0.62
PTX4Q96A99 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTX4Q96A99 FBXW4P1-201ENST00000426721 2239 ntBASIC18.94■□□□□ 0.62
PTX4Q96A99 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.94■□□□□ 0.62
PTX4Q96A99 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PTX4Q96A99 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.94■□□□□ 0.62
PTX4Q96A99 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTX4Q96A99 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTX4Q96A99 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.94■□□□□ 0.62
PTX4Q96A99 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.94■□□□□ 0.62
PTX4Q96A99 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.94■□□□□ 0.62
PTX4Q96A99 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTX4Q96A99 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.93■□□□□ 0.62
PTX4Q96A99 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.93■□□□□ 0.62
PTX4Q96A99 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.93■□□□□ 0.62
PTX4Q96A99 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PTX4Q96A99 KRT18P24-201ENST00000344739 1156 ntBASIC18.93■□□□□ 0.62
PTX4Q96A99 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.93■□□□□ 0.62
PTX4Q96A99 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTX4Q96A99 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTX4Q96A99 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.92■□□□□ 0.62
PTX4Q96A99 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
PTX4Q96A99 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTX4Q96A99 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.92■□□□□ 0.62
PTX4Q96A99 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.92■□□□□ 0.62
PTX4Q96A99 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
PTX4Q96A99 AL137060.1-201ENST00000618151 2648 ntBASIC18.92■□□□□ 0.62
PTX4Q96A99 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PTX4Q96A99 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTX4Q96A99 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTX4Q96A99 AL024507.2-201ENST00000606070 2574 ntBASIC18.91■□□□□ 0.62
PTX4Q96A99 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 ABHD17AP5-201ENST00000580133 923 ntBASIC18.91■□□□□ 0.62
PTX4Q96A99 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PTX4Q96A99 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.91■□□□□ 0.62
PTX4Q96A99 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.91■□□□□ 0.62
PTX4Q96A99 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PTX4Q96A99 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTX4Q96A99 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.9■□□□□ 0.62
PTX4Q96A99 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms