Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SLC44A3Q8N4M1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SLC44A3Q8N4M1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SLC44A3Q8N4M1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 AC026185.1-201ENST00000445748 174 ntBASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.95■■□□□ 1.26
SLC44A3Q8N4M1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.94■■□□□ 1.26
SLC44A3Q8N4M1 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 AC145676.1-201ENST00000514988 2004 ntBASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SLC44A3Q8N4M1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 AP004607.4-201ENST00000530158 1459 ntBASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 TPRG1LP1-201ENST00000598702 760 ntBASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 AC104771.1-201ENST00000603335 964 ntBASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22.92■■□□□ 1.26
SLC44A3Q8N4M1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SLC44A3Q8N4M1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SLC44A3Q8N4M1 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms