Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 THA1P-201ENST00000590384 1145 ntBASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DEPDC4Q8N2C3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DEPDC4Q8N2C3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 KRT18P24-201ENST00000344739 1156 ntBASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DEPDC4Q8N2C3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DEPDC4Q8N2C3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DEPDC4Q8N2C3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.52■□□□□ 0.87
DEPDC4Q8N2C3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
DEPDC4Q8N2C3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
DEPDC4Q8N2C3 AC007375.3-201ENST00000600936 2314 ntBASIC20.52■□□□□ 0.87
DEPDC4Q8N2C3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 BX664725.1-201ENST00000438252 379 ntBASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 KRT125P-201ENST00000546827 989 ntBASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 Z92544.1-202ENST00000571933 1220 ntBASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.51■□□□□ 0.87
DEPDC4Q8N2C3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
DEPDC4Q8N2C3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 ALDH1A3-203ENST00000557963 1670 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms