Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USP48Q86UV5 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP48Q86UV5 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC27.23■■□□□ 1.95
USP48Q86UV5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC27.23■■□□□ 1.95
USP48Q86UV5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC27.23■■□□□ 1.95
USP48Q86UV5 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP48Q86UV5 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC27.22■■□□□ 1.95
USP48Q86UV5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC27.22■■□□□ 1.95
USP48Q86UV5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC27.22■■□□□ 1.95
USP48Q86UV5 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.22■■□□□ 1.95
USP48Q86UV5 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP48Q86UV5 AC123595.1-201ENST00000440769 1046 ntBASIC27.21■■□□□ 1.95
USP48Q86UV5 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
USP48Q86UV5 MIR6084-201ENST00000622012 110 ntBASIC27.21■■□□□ 1.95
USP48Q86UV5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP48Q86UV5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP48Q86UV5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC27.21■■□□□ 1.95
USP48Q86UV5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC27.21■■□□□ 1.95
USP48Q86UV5 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
USP48Q86UV5 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.2■■□□□ 1.95
USP48Q86UV5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC27.2■■□□□ 1.95
USP48Q86UV5 AC027612.3-201ENST00000413684 1047 ntBASIC27.2■■□□□ 1.94
USP48Q86UV5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP48Q86UV5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC27.2■■□□□ 1.94
USP48Q86UV5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC27.2■■□□□ 1.94
USP48Q86UV5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC27.2■■□□□ 1.94
USP48Q86UV5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC27.2■■□□□ 1.94
USP48Q86UV5 AC141586.4-201ENST00000624558 1573 ntBASIC27.2■■□□□ 1.94
USP48Q86UV5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC27.2■■□□□ 1.94
USP48Q86UV5 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP48Q86UV5 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
USP48Q86UV5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27.2■■□□□ 1.94
USP48Q86UV5 AC004812.2-201ENST00000611079 2094 ntBASIC27.2■■□□□ 1.94
USP48Q86UV5 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
USP48Q86UV5 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
USP48Q86UV5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC27.19■■□□□ 1.94
USP48Q86UV5 AL358852.1-201ENST00000623174 1268 ntBASIC27.19■■□□□ 1.94
USP48Q86UV5 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP48Q86UV5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
USP48Q86UV5 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP48Q86UV5 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP48Q86UV5 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC27.18■■□□□ 1.94
USP48Q86UV5 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP48Q86UV5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
USP48Q86UV5 NKILA-201ENST00000613231 537 ntTSL 4 BASIC27.18■■□□□ 1.94
USP48Q86UV5 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
USP48Q86UV5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP48Q86UV5 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.17■■□□□ 1.94
USP48Q86UV5 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC27.17■■□□□ 1.94
USP48Q86UV5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.17■■□□□ 1.94
USP48Q86UV5 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC27.17■■□□□ 1.94
USP48Q86UV5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
USP48Q86UV5 NTF6G-201ENST00000591094 616 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 pRNA.6-201ENST00000610482 90 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 pRNA.5-201ENST00000612139 90 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC27.17■■□□□ 1.94
USP48Q86UV5 pRNA.11-201ENST00000618423 90 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 pRNA.13-201ENST00000619112 90 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.17■■□□□ 1.94
USP48Q86UV5 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
USP48Q86UV5 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
USP48Q86UV5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP48Q86UV5 AC068473.5-201ENST00000616428 2072 ntBASIC27.17■■□□□ 1.94
USP48Q86UV5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.16■■□□□ 1.94
USP48Q86UV5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC27.16■■□□□ 1.94
USP48Q86UV5 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.16■■□□□ 1.94
USP48Q86UV5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USP48Q86UV5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
USP48Q86UV5 HLA-L-209ENST00000420110 1011 ntBASIC27.16■■□□□ 1.94
USP48Q86UV5 CCDC92B-201ENST00000575506 885 ntBASIC27.16■■□□□ 1.94
USP48Q86UV5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
USP48Q86UV5 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC27.16■■□□□ 1.94
USP48Q86UV5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.16■■□□□ 1.94
USP48Q86UV5 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
USP48Q86UV5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC27.15■■□□□ 1.94
USP48Q86UV5 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
USP48Q86UV5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
USP48Q86UV5 AC012676.1-201ENST00000574705 1949 ntBASIC27.15■■□□□ 1.94
USP48Q86UV5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
USP48Q86UV5 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms