Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 AC006970.2-201ENST00000450065 779 ntBASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 MIR6089-201ENST00000616698 64 ntBASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CSPG4Q6UVK1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 GPX1P1-201ENST00000388829 606 ntBASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 CD99P1-205ENST00000527459 561 ntBASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSPG4Q6UVK1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 TPRG1LP1-201ENST00000598702 760 ntBASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 DUSP8P4-201ENST00000399538 1761 ntBASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 MIR663A-201ENST00000385250 93 ntBASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.43■□□□□ 0.54
CSPG4Q6UVK1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 LINC02228-203ENST00000641970 1355 ntBASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 AL109923.1-201ENST00000618799 583 ntBASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CSPG4Q6UVK1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.41■□□□□ 0.54
CSPG4Q6UVK1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 BID-214ENST00000617586 542 ntTSL 5 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.4■□□□□ 0.54
CSPG4Q6UVK1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CSPG4Q6UVK1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CSPG4Q6UVK1 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 KRT19P1-201ENST00000405746 1186 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms