Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 ABCB10P4-201ENST00000566803 2184 ntBASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 YBX1P1-201ENST00000445822 960 ntBASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNFT1Q5M7Z0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 AC079630.1-202ENST00000618127 1840 ntBASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.12■□□□□ 0.81
RNFT1Q5M7Z0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 AL358852.1-201ENST00000623174 1268 ntBASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.11■□□□□ 0.81
RNFT1Q5M7Z0 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNFT1Q5M7Z0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 AC027612.3-201ENST00000413684 1047 ntBASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 AC034268.1-201ENST00000441047 882 ntBASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 AC012414.1-201ENST00000556676 535 ntBASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNFT1Q5M7Z0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L2-201ENST00000561772 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L6-201ENST00000626483 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L1-201ENST00000627662 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L8-201ENST00000629013 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L3-201ENST00000630187 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L7-201ENST00000630678 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DUX4L5-201ENST00000630834 1275 ntBASIC20.08■□□□□ 0.81
RNFT1Q5M7Z0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.08■□□□□ 0.8
RNFT1Q5M7Z0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
RNFT1Q5M7Z0 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.08■□□□□ 0.8
RNFT1Q5M7Z0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 AP005435.1-201ENST00000529293 1178 ntBASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.07■□□□□ 0.8
RNFT1Q5M7Z0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms