Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 AC022616.5-201ENST00000518796 181 ntBASIC19.77■□□□□ 0.76
CCDC58Q4VC31 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC58Q4VC31 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.77■□□□□ 0.75
CCDC58Q4VC31 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC58Q4VC31 AC079630.1-202ENST00000618127 1840 ntBASIC19.76■□□□□ 0.75
CCDC58Q4VC31 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.76■□□□□ 0.75
CCDC58Q4VC31 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC58Q4VC31 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC58Q4VC31 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 AC019171.1-201ENST00000601251 1056 ntBASIC19.74■□□□□ 0.75
CCDC58Q4VC31 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC58Q4VC31 AC073130.3-201ENST00000624389 2278 ntBASIC19.74■□□□□ 0.75
CCDC58Q4VC31 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC58Q4VC31 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC58Q4VC31 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
CCDC58Q4VC31 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms