Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RPL39P62891 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPL39P62891 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPL39P62891 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RPL39P62891 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RPL39P62891 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RPL39P62891 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC15.69■□□□□ 0.1
RPL39P62891 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC15.69■□□□□ 0.1
RPL39P62891 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RPL39P62891 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RPL39P62891 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RPL39P62891 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC15.69■□□□□ 0.1
RPL39P62891 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPL39P62891 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
RPL39P62891 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC15.68■□□□□ 0.1
RPL39P62891 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC15.68■□□□□ 0.1
RPL39P62891 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC15.68■□□□□ 0.1
RPL39P62891 AC080038.3-201ENST00000623346 1952 ntBASIC15.68■□□□□ 0.1
RPL39P62891 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 MIR639-201ENST00000384974 98 ntBASIC15.68■□□□□ 0.1
RPL39P62891 HES4-202ENST00000428771 1040 ntTSL 2 BASIC15.68■□□□□ 0.1
RPL39P62891 STK32C-205ENST00000456004 607 ntTSL 2 BASIC15.68■□□□□ 0.1
RPL39P62891 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC15.68■□□□□ 0.1
RPL39P62891 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RPL39P62891 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC15.67■□□□□ 0.1
RPL39P62891 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC15.67■□□□□ 0.1
RPL39P62891 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC15.67■□□□□ 0.1
RPL39P62891 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 RPS2-202ENST00000526522 924 ntTSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 AC018755.3-202ENST00000596210 929 ntBASIC15.67■□□□□ 0.1
RPL39P62891 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
RPL39P62891 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC15.67■□□□□ 0.1
RPL39P62891 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RPL39P62891 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC15.66■□□□□ 0.1
RPL39P62891 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
RPL39P62891 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC15.66■□□□□ 0.1
RPL39P62891 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RPL39P62891 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC15.66■□□□□ 0.1
RPL39P62891 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC15.66■□□□□ 0.1
RPL39P62891 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC15.66■□□□□ 0.1
RPL39P62891 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.66■□□□□ 0.1
RPL39P62891 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RPL39P62891 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC15.66■□□□□ 0.1
RPL39P62891 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC15.65■□□□□ 0.1
RPL39P62891 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC15.65■□□□□ 0.1
RPL39P62891 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RPL39P62891 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RPL39P62891 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RPL39P62891 AC087393.1-201ENST00000582896 145 ntBASIC15.65■□□□□ 0.1
RPL39P62891 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RPL39P62891 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RPL39P62891 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.65■□□□□ 0.1
RPL39P62891 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RPL39P62891 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RPL39P62891 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RPL39P62891 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RPL39P62891 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
RPL39P62891 GPX1-201ENST00000419349 1106 ntBASIC15.64■□□□□ 0.09
RPL39P62891 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RPL39P62891 SPCS2P3-201ENST00000500401 656 ntBASIC15.64■□□□□ 0.09
RPL39P62891 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
RPL39P62891 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms