Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
SHMT1P34896 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.21■■□□□ 1.79
SHMT1P34896 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC26.21■■□□□ 1.79
SHMT1P34896 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 MIR572-201ENST00000384983 95 ntBASIC26.21■■□□□ 1.79
SHMT1P34896 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SHMT1P34896 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.21■■□□□ 1.79
SHMT1P34896 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SHMT1P34896 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC26.2■■□□□ 1.79
SHMT1P34896 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.2■■□□□ 1.79
SHMT1P34896 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.2■■□□□ 1.78
SHMT1P34896 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC26.2■■□□□ 1.78
SHMT1P34896 AL162430.1-201ENST00000480705 870 ntBASIC26.2■■□□□ 1.78
SHMT1P34896 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC26.2■■□□□ 1.78
SHMT1P34896 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHMT1P34896 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
SHMT1P34896 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC26.19■■□□□ 1.78
SHMT1P34896 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.19■■□□□ 1.78
SHMT1P34896 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 AC104564.3-201ENST00000582367 638 ntBASIC26.19■■□□□ 1.78
SHMT1P34896 AL031602.1-201ENST00000633169 911 ntBASIC26.19■■□□□ 1.78
SHMT1P34896 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
SHMT1P34896 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
SHMT1P34896 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHMT1P34896 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
SHMT1P34896 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SHMT1P34896 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHMT1P34896 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
SHMT1P34896 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
SHMT1P34896 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
SHMT1P34896 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHMT1P34896 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.17■■□□□ 1.78
SHMT1P34896 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.17■■□□□ 1.78
SHMT1P34896 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHMT1P34896 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHMT1P34896 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHMT1P34896 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHMT1P34896 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHMT1P34896 NME4-202ENST00000382940 766 ntTSL 3 BASIC26.16■■□□□ 1.78
SHMT1P34896 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHMT1P34896 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHMT1P34896 NME4-211ENST00000620944 1193 ntTSL 2 BASIC26.16■■□□□ 1.78
SHMT1P34896 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
SHMT1P34896 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHMT1P34896 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
SHMT1P34896 AL353803.4-201ENST00000565882 1934 ntBASIC26.16■■□□□ 1.78
SHMT1P34896 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHMT1P34896 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHMT1P34896 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHMT1P34896 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHMT1P34896 YBX1P1-201ENST00000445822 960 ntBASIC26.15■■□□□ 1.78
SHMT1P34896 AP005435.1-201ENST00000529293 1178 ntBASIC26.15■■□□□ 1.78
SHMT1P34896 MIR6084-201ENST00000622012 110 ntBASIC26.15■■□□□ 1.78
SHMT1P34896 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
SHMT1P34896 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC26.15■■□□□ 1.78
SHMT1P34896 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SHMT1P34896 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.14■■□□□ 1.78
SHMT1P34896 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SHMT1P34896 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHMT1P34896 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHMT1P34896 AC012414.1-201ENST00000556676 535 ntBASIC26.14■■□□□ 1.78
SHMT1P34896 AL358852.1-201ENST00000623174 1268 ntBASIC26.14■■□□□ 1.78
SHMT1P34896 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHMT1P34896 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SHMT1P34896 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
SHMT1P34896 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
SHMT1P34896 HACD1-201ENST00000326961 773 ntTSL 2 BASIC26.13■■□□□ 1.77
SHMT1P34896 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHMT1P34896 AC027612.3-201ENST00000413684 1047 ntBASIC26.13■■□□□ 1.77
SHMT1P34896 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
SHMT1P34896 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SHMT1P34896 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHMT1P34896 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SHMT1P34896 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
SHMT1P34896 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC26.13■■□□□ 1.77
SHMT1P34896 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SHMT1P34896 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
SHMT1P34896 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SHMT1P34896 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
SHMT1P34896 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC26.12■■□□□ 1.77
SHMT1P34896 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC26.12■■□□□ 1.77
SHMT1P34896 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.12■■□□□ 1.77
SHMT1P34896 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.12■■□□□ 1.77
SHMT1P34896 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.12■■□□□ 1.77
SHMT1P34896 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC26.12■■□□□ 1.77
SHMT1P34896 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
SHMT1P34896 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SHMT1P34896 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
SHMT1P34896 AC004687.1-201ENST00000579003 1625 ntBASIC26.11■■□□□ 1.77
SHMT1P34896 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SHMT1P34896 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms