Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.18■■□□□ 1.62
CIITAP33076 AP001330.3-201ENST00000520123 633 ntBASIC25.18■■□□□ 1.62
CIITAP33076 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.18■■□□□ 1.62
CIITAP33076 DUSP8P3-201ENST00000399571 1760 ntBASIC25.18■■□□□ 1.62
CIITAP33076 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.18■■□□□ 1.62
CIITAP33076 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.17■■□□□ 1.62
CIITAP33076 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.17■■□□□ 1.62
CIITAP33076 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CIITAP33076 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CIITAP33076 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CIITAP33076 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
CIITAP33076 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CIITAP33076 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.17■■□□□ 1.62
CIITAP33076 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.17■■□□□ 1.62
CIITAP33076 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 MIR939-201ENST00000401314 82 ntBASIC25.16■■□□□ 1.62
CIITAP33076 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 AL136967.2-201ENST00000623968 743 ntBASIC25.16■■□□□ 1.62
CIITAP33076 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CIITAP33076 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.16■■□□□ 1.62
CIITAP33076 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CIITAP33076 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CIITAP33076 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.15■■□□□ 1.62
CIITAP33076 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
CIITAP33076 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.15■■□□□ 1.62
CIITAP33076 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CIITAP33076 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CIITAP33076 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
CIITAP33076 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CIITAP33076 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.14■■□□□ 1.62
CIITAP33076 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CIITAP33076 BX842568.3-201ENST00000418104 571 ntBASIC25.14■■□□□ 1.62
CIITAP33076 OR2I1P-207ENST00000453522 948 ntBASIC25.14■■□□□ 1.62
CIITAP33076 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
CIITAP33076 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CIITAP33076 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CIITAP33076 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CIITAP33076 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.13■■□□□ 1.61
CIITAP33076 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.13■■□□□ 1.61
CIITAP33076 AF213884.3-201ENST00000563833 479 ntBASIC25.13■■□□□ 1.61
CIITAP33076 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CIITAP33076 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CIITAP33076 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.13■■□□□ 1.61
CIITAP33076 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CIITAP33076 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CIITAP33076 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.13■■□□□ 1.61
CIITAP33076 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
CIITAP33076 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CIITAP33076 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.12■■□□□ 1.61
CIITAP33076 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CIITAP33076 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.12■■□□□ 1.61
CIITAP33076 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.12■■□□□ 1.61
CIITAP33076 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
CIITAP33076 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CIITAP33076 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
CIITAP33076 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CIITAP33076 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CIITAP33076 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CIITAP33076 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.11■■□□□ 1.61
CIITAP33076 AC142381.2-201ENST00000566120 298 ntBASIC25.11■■□□□ 1.61
CIITAP33076 AC233992.3-201ENST00000607491 485 ntBASIC25.11■■□□□ 1.61
CIITAP33076 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.11■■□□□ 1.61
CIITAP33076 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.1■■□□□ 1.61
CIITAP33076 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CIITAP33076 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CIITAP33076 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.1■■□□□ 1.61
CIITAP33076 SLC47A1P1-202ENST00000449666 945 ntBASIC25.1■■□□□ 1.61
CIITAP33076 AC091305.1-201ENST00000479476 895 ntBASIC25.1■■□□□ 1.61
CIITAP33076 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.1■■□□□ 1.61
CIITAP33076 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CIITAP33076 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CIITAP33076 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CIITAP33076 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
CIITAP33076 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
CIITAP33076 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.09■■□□□ 1.61
CIITAP33076 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CIITAP33076 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.09■■□□□ 1.61
CIITAP33076 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CIITAP33076 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CIITAP33076 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CIITAP33076 AC027682.1-201ENST00000562846 899 ntBASIC25.09■■□□□ 1.61
CIITAP33076 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.09■■□□□ 1.61
CIITAP33076 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms