Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CSB-PGBD3P0DP91 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CSB-PGBD3P0DP91 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CSB-PGBD3P0DP91 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CSB-PGBD3P0DP91 TK2-208ENST00000545043 1120 ntTSL 2 BASIC29.76■■■□□ 2.35
CSB-PGBD3P0DP91 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
CSB-PGBD3P0DP91 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CSB-PGBD3P0DP91 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC29.75■■■□□ 2.35
CSB-PGBD3P0DP91 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC29.75■■■□□ 2.35
CSB-PGBD3P0DP91 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 AC016769.1-201ENST00000409132 1010 ntBASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 KRT18P61-201ENST00000585825 1298 ntBASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CSB-PGBD3P0DP91 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 AC137761.2-201ENST00000561729 223 ntBASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 AC145350.3-201ENST00000569033 163 ntBASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 LINC01529-204ENST00000636474 1715 ntBASIC29.73■■■□□ 2.35
CSB-PGBD3P0DP91 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
CSB-PGBD3P0DP91 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 MFF-208ENST00000409616 1247 ntTSL 5 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 AC006015.1-201ENST00000429970 570 ntBASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 STX4-202ENST00000394998 1498 ntTSL 2 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CSB-PGBD3P0DP91 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 GALNS-213ENST00000569433 723 ntTSL 3 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 GXYLT1P5-201ENST00000614548 1189 ntBASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC29.7■■■□□ 2.35
CSB-PGBD3P0DP91 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
CSB-PGBD3P0DP91 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
CSB-PGBD3P0DP91 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC29.7■■■□□ 2.34
CSB-PGBD3P0DP91 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 AC022211.4-201ENST00000625094 2161 ntBASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 AC144652.1-201ENST00000609974 1624 ntBASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
CSB-PGBD3P0DP91 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CSB-PGBD3P0DP91 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CSB-PGBD3P0DP91 RARA-203ENST00000394086 2008 ntTSL 2 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 AP003733.4-201ENST00000623785 1697 ntBASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
CSB-PGBD3P0DP91 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CSB-PGBD3P0DP91 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CSB-PGBD3P0DP91 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC29.66■■■□□ 2.34
CSB-PGBD3P0DP91 CDCA4P2-201ENST00000441182 718 ntBASIC29.66■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms