Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND1P03886 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND1P03886 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND1P03886 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND1P03886 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.91■□□□□ 0.94
MT-ND1P03886 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
MT-ND1P03886 AC019171.1-201ENST00000601251 1056 ntBASIC20.91■□□□□ 0.94
MT-ND1P03886 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
MT-ND1P03886 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND1P03886 FBXW4P1-201ENST00000426721 2239 ntBASIC20.9■□□□□ 0.94
MT-ND1P03886 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 AC011551.1-201ENST00000614101 683 ntBASIC20.9■□□□□ 0.94
MT-ND1P03886 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
MT-ND1P03886 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 C11orf96-202ENST00000528572 1834 ntBASIC20.9■□□□□ 0.94
MT-ND1P03886 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
MT-ND1P03886 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND1P03886 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.89■□□□□ 0.94
MT-ND1P03886 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
MT-ND1P03886 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MT-ND1P03886 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.89■□□□□ 0.94
MT-ND1P03886 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND1P03886 AC080038.3-201ENST00000623346 1952 ntBASIC20.89■□□□□ 0.93
MT-ND1P03886 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.89■□□□□ 0.93
MT-ND1P03886 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
MT-ND1P03886 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.89■□□□□ 0.93
MT-ND1P03886 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND1P03886 AC139795.1-202ENST00000500444 432 ntBASIC20.89■□□□□ 0.93
MT-ND1P03886 DUX4L18-201ENST00000553347 1267 ntBASIC20.89■□□□□ 0.93
MT-ND1P03886 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.89■□□□□ 0.93
MT-ND1P03886 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
MT-ND1P03886 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND1P03886 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND1P03886 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND1P03886 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND1P03886 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
MT-ND1P03886 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MT-ND1P03886 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MT-ND1P03886 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND1P03886 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND1P03886 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MT-ND1P03886 AC022616.5-201ENST00000518796 181 ntBASIC20.88■□□□□ 0.93
MT-ND1P03886 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND1P03886 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.87■□□□□ 0.93
MT-ND1P03886 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.87■□□□□ 0.93
MT-ND1P03886 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MT-ND1P03886 AC092053.2-201ENST00000640557 1818 ntBASIC20.87■□□□□ 0.93
MT-ND1P03886 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND1P03886 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND1P03886 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MT-ND1P03886 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND1P03886 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.86■□□□□ 0.93
MT-ND1P03886 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.86■□□□□ 0.93
MT-ND1P03886 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND1P03886 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND1P03886 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MT-ND1P03886 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.85■□□□□ 0.93
MT-ND1P03886 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND1P03886 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND1P03886 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND1P03886 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND1P03886 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND1P03886 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.85■□□□□ 0.93
MT-ND1P03886 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND1P03886 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND1P03886 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.84■□□□□ 0.93
MT-ND1P03886 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
MT-ND1P03886 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND1P03886 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND1P03886 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms