Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA1O95477 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.57■□□□□ 0.56
ABCA1O95477 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.56■□□□□ 0.56
ABCA1O95477 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.56■□□□□ 0.56
ABCA1O95477 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA1O95477 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.56■□□□□ 0.56
ABCA1O95477 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.56■□□□□ 0.56
ABCA1O95477 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.56■□□□□ 0.56
ABCA1O95477 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
ABCA1O95477 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ABCA1O95477 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ABCA1O95477 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.55■□□□□ 0.56
ABCA1O95477 RAP2CP1-201ENST00000605103 478 ntBASIC18.55■□□□□ 0.56
ABCA1O95477 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
ABCA1O95477 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
ABCA1O95477 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ABCA1O95477 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA1O95477 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.54■□□□□ 0.56
ABCA1O95477 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA1O95477 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA1O95477 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.54■□□□□ 0.56
ABCA1O95477 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.54■□□□□ 0.56
ABCA1O95477 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.54■□□□□ 0.56
ABCA1O95477 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA1O95477 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
ABCA1O95477 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA1O95477 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.53■□□□□ 0.56
ABCA1O95477 MIR6089-201ENST00000616698 64 ntBASIC18.53■□□□□ 0.56
ABCA1O95477 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.53■□□□□ 0.56
ABCA1O95477 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
ABCA1O95477 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.53■□□□□ 0.56
ABCA1O95477 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.53■□□□□ 0.56
ABCA1O95477 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
ABCA1O95477 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA1O95477 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.52■□□□□ 0.56
ABCA1O95477 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.52■□□□□ 0.56
ABCA1O95477 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.52■□□□□ 0.56
ABCA1O95477 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
ABCA1O95477 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.52■□□□□ 0.56
ABCA1O95477 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA1O95477 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA1O95477 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.52■□□□□ 0.55
ABCA1O95477 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.52■□□□□ 0.55
ABCA1O95477 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA1O95477 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA1O95477 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA1O95477 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.52■□□□□ 0.55
ABCA1O95477 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA1O95477 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.51■□□□□ 0.55
ABCA1O95477 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.51■□□□□ 0.55
ABCA1O95477 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.51■□□□□ 0.55
ABCA1O95477 AC010525.1-201ENST00000585559 441 ntBASIC18.51■□□□□ 0.55
ABCA1O95477 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
ABCA1O95477 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA1O95477 HLA-L-209ENST00000420110 1011 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms