Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC163A0A0D9SF12 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC163A0A0D9SF12 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.27■■□□□ 1.16
CCDC163A0A0D9SF12 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.27■■□□□ 1.16
CCDC163A0A0D9SF12 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC163A0A0D9SF12 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 BID-214ENST00000617586 542 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 LINC01529-204ENST00000636474 1715 ntBASIC22.26■■□□□ 1.15
CCDC163A0A0D9SF12 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 AP004607.4-201ENST00000530158 1459 ntBASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 AL121749.1-202ENST00000609313 2153 ntBASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC163A0A0D9SF12 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 AC104771.1-201ENST00000603335 964 ntBASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC163A0A0D9SF12 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 AC145676.1-201ENST00000514988 2004 ntBASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 KRT19P1-201ENST00000405746 1186 ntBASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 AC144652.1-201ENST00000609974 1624 ntBASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC163A0A0D9SF12 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC163A0A0D9SF12 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC163A0A0D9SF12 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
CCDC163A0A0D9SF12 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC163A0A0D9SF12 KRT18P11-201ENST00000435214 1283 ntBASIC22.2■■□□□ 1.14
CCDC163A0A0D9SF12 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC163A0A0D9SF12 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC163A0A0D9SF12 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 AC006970.2-201ENST00000450065 779 ntBASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CCDC163A0A0D9SF12 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 BX005040.4-201ENST00000637145 1518 ntBASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 AC004854.2-201ENST00000608450 1441 ntBASIC22.18■■□□□ 1.14
CCDC163A0A0D9SF12 ABHD17AP1-201ENST00000358206 933 ntBASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms