Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV39A0A0B4J263 MTDHP2-201ENST00000601468 714 ntBASIC18.58■□□□□ 0.56
TRAV39A0A0B4J263 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV39A0A0B4J263 AC079834.2-201ENST00000609776 1949 ntBASIC18.58■□□□□ 0.56
TRAV39A0A0B4J263 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
TRAV39A0A0B4J263 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 Z92544.1-202ENST00000571933 1220 ntBASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAV39A0A0B4J263 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 AC144652.1-201ENST00000609974 1624 ntBASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV39A0A0B4J263 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 GUSBP5-202ENST00000510805 1989 ntBASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV39A0A0B4J263 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 AC010997.5-201ENST00000609182 354 ntBASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAV39A0A0B4J263 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV39A0A0B4J263 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV39A0A0B4J263 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV39A0A0B4J263 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAV39A0A0B4J263 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV39A0A0B4J263 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV39A0A0B4J263 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.52■□□□□ 0.55
TRAV39A0A0B4J263 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.52■□□□□ 0.55
TRAV39A0A0B4J263 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV39A0A0B4J263 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV39A0A0B4J263 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV39A0A0B4J263 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.51■□□□□ 0.55
TRAV39A0A0B4J263 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV39A0A0B4J263 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAV39A0A0B4J263 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV39A0A0B4J263 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms