Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 SFTPA1-203ENST00000428376 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 KRT18P40-201ENST00000599859 1571 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.46■□□□□ 0.07
SMARCA1P28370 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
SMARCA1P28370 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC15.46■□□□□ 0.07
SMARCA1P28370 PHBP10-201ENST00000416467 784 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
SMARCA1P28370 ZNF877P-201ENST00000437614 612 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 VENTXP4-201ENST00000449029 958 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC15.46■□□□□ 0.07
SMARCA1P28370 AL157792.1-201ENST00000488281 530 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 CXXC1P1-202ENST00000489409 1212 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC15.46■□□□□ 0.07
SMARCA1P28370 AC091304.3-201ENST00000566500 716 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC15.46■□□□□ 0.07
SMARCA1P28370 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.46■□□□□ 0.07
SMARCA1P28370 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC15.46■□□□□ 0.07
SMARCA1P28370 MKRN7P-201ENST00000433469 1371 ntBASIC15.46■□□□□ 0.07
SMARCA1P28370 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
SMARCA1P28370 PPARG-206ENST00000397012 2006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SMARCA1P28370 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SMARCA1P28370 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SMARCA1P28370 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
SMARCA1P28370 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.46■□□□□ 0.06
SMARCA1P28370 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SMARCA1P28370 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
SMARCA1P28370 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
SMARCA1P28370 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
SMARCA1P28370 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
SMARCA1P28370 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
SMARCA1P28370 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
SMARCA1P28370 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 OR51A9P-201ENST00000422578 911 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 REEP5-205ENST00000504247 480 ntTSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 FAM86B3P-203ENST00000523992 854 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 PHBP18-201ENST00000546648 813 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 AC068831.5-201ENST00000557387 328 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC15.45■□□□□ 0.06
SMARCA1P28370 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC15.45■□□□□ 0.06
SMARCA1P28370 AC010632.2-201ENST00000588369 1224 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC15.45■□□□□ 0.06
SMARCA1P28370 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC15.45■□□□□ 0.06
SMARCA1P28370 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 AL139823.1-201ENST00000641871 1225 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 AP000229.1-201ENST00000608591 1979 ntTSL 4 BASIC15.45■□□□□ 0.06
SMARCA1P28370 DDX12P-201ENST00000432996 2947 ntBASIC15.45■□□□□ 0.06
SMARCA1P28370 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC15.45■□□□□ 0.06
SMARCA1P28370 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SMARCA1P28370 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms