Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AC073413.1-201ENST00000603927 732 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 ZACNP1-201ENST00000612259 710 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 MIR6842-201ENST00000612539 65 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AL023803.2-201ENST00000620080 638 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AC090386.2-201ENST00000623010 1039 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AC051619.9-201ENST00000623237 597 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AC074138.1-201ENST00000611182 1303 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 RCC2P1-201ENST00000452257 1476 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 TMBIM7P-202ENST00000641474 1516 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 AL157791.1-201ENST00000553667 1699 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 SHC1P1-201ENST00000425230 1745 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 BEND3P3-201ENST00000611030 2440 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 KIAA1549-202ENST00000440172 12379 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 LINC00567-201ENST00000569854 3409 ntBASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 ARID4A-206ENST00000431317 5783 ntTSL 5 BASIC11.48□□□□□ -0.57
PDLIM3Q53GG5 PDE7B-201ENST00000308191 5390 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 SALL4P6-201ENST00000429385 1691 ntBASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 LINC01165-201ENST00000445190 1623 ntBASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AC025183.3-201ENST00000623526 1482 ntBASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 YRDCP1-201ENST00000621419 643 ntBASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AL132780.4-201ENST00000624870 1135 ntBASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 MME-218ENST00000625667 363 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 GMPS-203ENST00000496455 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 USP39-220ENST00000613444 2161 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PDLIM3Q53GG5 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 MSNP1-201ENST00000511640 1732 ntBASIC11.46□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms