Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 AC141586.1-203ENST00000567242 366 ntBASIC14.36□□□□□ -0.11
BDNFP23560 AC137723.2-201ENST00000623540 398 ntBASIC14.36□□□□□ -0.11
BDNFP23560 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.36□□□□□ -0.11
BDNFP23560 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.36□□□□□ -0.11
BDNFP23560 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 AL109809.1-201ENST00000418979 1367 ntBASIC14.35□□□□□ -0.11
BDNFP23560 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 AC087203.1-201ENST00000532111 1181 ntBASIC14.35□□□□□ -0.11
BDNFP23560 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 NAA38-204ENST00000575208 529 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 AC010632.2-201ENST00000588369 1224 ntBASIC14.35□□□□□ -0.11
BDNFP23560 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.35□□□□□ -0.11
BDNFP23560 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 AL160191.2-201ENST00000603975 601 ntBASIC14.35□□□□□ -0.11
BDNFP23560 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
BDNFP23560 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BDNFP23560 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
BDNFP23560 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
BDNFP23560 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 CICP20-201ENST00000443330 2801 ntBASIC14.34□□□□□ -0.11
BDNFP23560 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
BDNFP23560 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 RNA5SP491-201ENST00000362936 118 ntBASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms