Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 SCRN1-207ENST00000434476 1454 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 RPS9P1-201ENST00000419943 583 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 EEF1DP1-201ENST00000585891 896 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 DUSP22-211ENST00000604971 3824 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AL023803.2-201ENST00000620080 638 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 KCTD21-AS1-207ENST00000600795 1549 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC006033.2-201ENST00000609522 1968 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 CSPG4P11-201ENST00000560634 4910 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 EPS15L1-201ENST00000248070 2924 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ANKZF1-203ENST00000410034 2486 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC067931.2-201ENST00000623655 2003 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ABLIM3-203ENST00000356541 2290 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ABLIM3-211ENST00000517451 2287 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 KRT8P29-201ENST00000420409 1371 ntBASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 STRA6-204ENST00000423167 2776 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AC006144.1-201ENST00000424220 1600 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZNF133-201ENST00000316358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 LNP1-201ENST00000383693 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC112176.1-201ENST00000565428 3024 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AL022334.2-201ENST00000610000 484 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC006538.3-201ENST00000612495 578 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 HPSE2-201ENST00000370546 1849 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms