Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SMARCA1P28370 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SMARCA1P28370 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 AC008038.1-201ENST00000634247 1314 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
SMARCA1P28370 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC15.52■□□□□ 0.08
SMARCA1P28370 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC15.52■□□□□ 0.08
SMARCA1P28370 AC104961.1-201ENST00000427605 771 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.52■□□□□ 0.08
SMARCA1P28370 RPSAP12-201ENST00000435879 888 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
SMARCA1P28370 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC15.52■□□□□ 0.08
SMARCA1P28370 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC15.52■□□□□ 0.08
SMARCA1P28370 TREHP1-201ENST00000531328 465 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.52■□□□□ 0.08
SMARCA1P28370 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SMARCA1P28370 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.52■□□□□ 0.08
SMARCA1P28370 AP005264.6-204ENST00000588436 719 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 CYP4F36P-201ENST00000589193 186 ntBASIC15.52■□□□□ 0.08
SMARCA1P28370 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
SMARCA1P28370 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC15.52■□□□□ 0.08
SMARCA1P28370 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC15.52■□□□□ 0.07
SMARCA1P28370 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
SMARCA1P28370 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
SMARCA1P28370 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
SMARCA1P28370 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC15.52■□□□□ 0.07
SMARCA1P28370 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC15.52■□□□□ 0.07
SMARCA1P28370 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC15.52■□□□□ 0.07
SMARCA1P28370 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.52■□□□□ 0.07
SMARCA1P28370 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
SMARCA1P28370 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SMARCA1P28370 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
SMARCA1P28370 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SMARCA1P28370 CARS-214ENST00000529772 2637 ntTSL 2 BASIC15.51■□□□□ 0.07
SMARCA1P28370 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 TUBB8P5-201ENST00000445286 1351 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A21P-201ENST00000510875 1396 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A15P-201ENST00000514465 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A6P-201ENST00000515148 1394 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A16P-201ENST00000526662 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A9P-201ENST00000527940 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A5P-201ENST00000528738 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A14P-201ENST00000530386 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 FAM90A13P-201ENST00000534703 1395 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC15.51■□□□□ 0.07
SMARCA1P28370 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 PSMD4P1-201ENST00000433951 1109 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC15.51■□□□□ 0.07
SMARCA1P28370 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC15.51■□□□□ 0.07
SMARCA1P28370 URAHP-205ENST00000610227 398 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC15.51■□□□□ 0.07
SMARCA1P28370 MEP1AP1-201ENST00000636082 1097 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 AP000769.1-203ENST00000637245 208 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 HLA-C-210ENST00000640219 976 ntBASIC15.51■□□□□ 0.07
SMARCA1P28370 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
SMARCA1P28370 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SMARCA1P28370 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.51■□□□□ 0.07
SMARCA1P28370 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SMARCA1P28370 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SMARCA1P28370 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC15.5■□□□□ 0.07
SMARCA1P28370 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC15.5■□□□□ 0.07
SMARCA1P28370 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SMARCA1P28370 AL157832.2-205ENST00000597245 1649 ntBASIC15.5■□□□□ 0.07
SMARCA1P28370 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SMARCA1P28370 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SMARCA1P28370 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms